Gene detail

Detailed information of alvinactis_v1_g21040 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:1902558...1914082
NR annotation: QIC49989.1, structural maintenance of chromosomes protein 2 [Actinia equina]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21040

atgatgtcGTTTCCTAATCTTCAGTTTCAGTACAAAGATCCTGAAGCAAAGTTTGACAGAAGAAAGGTCAAAGGTCTAGTTGCACAGTTGATCAAAGTAAAAGATGTCAAGTATGCTACCAGTTTAGAGGTTGCAGCTGGAGGCAAGCTGTACAACGTTGTTGTGGATACTGAAATGACAGGGAAAAAGCTGTTACAACATGGTCAGCTAAAACGACGTTACACTATTATCCCACTGAACAAGATTTCCAGTAGATCTGTTTCCAAGGAAGCCATCAAGAAAGCTAAAGATTTGGTTGGTAAGGAGAATGTAAATGTAGCTCTATCTTTAGTGGGTTATGAAGATGACGTCAAGACTGCCATATCTTTCGTGTTCGGCTCTACTTTAGTCTGTGACACCATGGACCAAGCCAAGAAAGTTACATTTGATCCAAAAGTACATACAAGGTCAGTTACTCTGGAAGGCGATGTATTTGATCCAGCTGGAACTTTAACAGGAGGTGCCAGATCATCTTCTGGATCAATTCTCTCTAAGTTAGAAGAACTCAAACAGGCACAAGATGAGCTCAAACAAGCTCAAGAGGAACTGAAAAGAGTGAAAGAGGAACTGAATAATTGTAAAAATGTGGCTGAAAAGTACCAACACCTCAAGCAGCAATATGACCTAAAGAACCATGAAGCAGAGCTTGCACAAACAAGAATGAAGCAAAGTACCCACCACCACCAACTAGAGGAAGTCAAAGCACTAGAAAATACTGTTGAGGAGGAACAAAACGTCATAACTAAGGCCAAGGAGACTATTTCTGAAGCCACAGCAAAATGCAAAGATCTTGAGGATAAAATGAAGGAGGCCAAGTCGTACAGAGAAAAGGAGTTAAAAAAAGCTGAGGATGACCTCAACAAGGCCAAAAAGAAGGCTGAACAGAGTGTGAAAGAAACCAAAGCAAAACAGCAGGAAGTCGAGGGACTAAAGCTAGAAATGGAAGAACTTACCAAAGAATCCACTACCGTTGAAGAACAGATTAAGAAACTTGATGAGGCTATCGAGAAGATGGACGAGCAGGTGCAACAAGCAGTAGAAAAATCCAAGCTTACAAAGCAAGCCGTAAAGGAAGCAGAACAAGAACTCAATCAACAGAAACAAGCACTGAAAGTATTTGAAAAGGCAATCAGTGACAAAGTGTCGGCTCAACATCAACTCCAGAAAGAGAGTTCTAGCACACAGCTAGAAATAAAAGAGATCGATCACAAGATCTCCAAACTACAGAAGGAAAGCAAGGACGCTGTACAAAGGGTGGAGAGTATGTTACAAAAGTACGAATGGATCCAAAATGAACGGCAGTTTTTTGGTCAGGCAAACACAGCTTATGATTTCGCTGCCAATGACATGAAGGACATCAGTAAACGTCTGGGGAAACTCCAGGAAACCAAAGAGAAACTCGGCAAGAAAGTGAATATGCGAGCAATGAACATGTTAGAAAAGGCTGAAGAAAAGTATAATGACCTGTTGAAGAAGAAGCGTATTGTATTGAACGACAAAGACAAGATTGCAGCTGTGATCAAAGAGCTGGACGAGAAAAAGAACGAAGCTCTAAGAAATGCTTGGGTTAAAGTTAATAAGgactttggttccatattttcAACTCTTCTTCCCGGAGCCACAGCCAAATTAGCTCCACCAGAAGGTGGCATTGCGGAAGTGGATGGACTGGAAGTGAAGGTTGGATTTGGGAACGTGTGGAAAGAAAGTCTGAGTGAACTAAGCGGTGGACAAAGATCTCTGGTCGCGCTTTCTCTCATCCTGTCACTCCTACTCTTCAAGCCCGCTCCCCTGTACATCTTGGACGAGGTGGACGCCGCCCTTGATCTCTCCCACACACAAAACATCGGGCAGATGCTGCGCACACATTTTCGTCATTCTCAGTTTATCGTAGTATCTCTCAAAGACGGCATGTTTAATAATGCTAACGTGCTCTTTAAAACCAAGTTTGTCGATGGCGTCTCGACTGTTACGCGCTATGCTACACCACATAGAAAGTAA

Transcript

alvinactis_v1_g21040

Protein

Uniprot

Uniprot term	Description
Q8CG48	Structural maintenance of chromosomes protein 2 OS=Mus musculus OX=10090 GN=Smc2 PE=1 SV=2
O95347	Structural maintenance of chromosomes protein 2 OS=Homo sapiens OX=9606 GN=SMC2 PE=1 SV=2
Q90988	Structural maintenance of chromosomes protein 2 OS=Gallus gallus OX=9031 GN=SMC2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06674	SMC2; structural maintenance of chromosome 2	-	Chromosome and associated proteins	ko03036	deepkoala