Gene detail

Detailed information of alvinactis_v1_g21149 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:4055024...4109987
NR annotation: XP_028513702.1, rho GTPase-activating protein 45 isoform X1 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g21149

ATGGCTGGCTTTGCACCTTTTGGGAGAGACGATCAACCACTTCTTGATGTCAAAATCGTTGGAGGAAAACGGTTAGAGATAGTAGTCGATCGCTATGGAAAACCATTGAATAAAGACAACAAACCCAAAGGAAGCGAATCGAGGTTTTCACGCTCGTTGTCCGAGGAACGGAACATACAGAATTGTAATTCAAGTCAAAGTCCCTCTGTCCCACCGTGGATACGAGGAGTAACTCCACCTAACAAGATGTTAAAACCGTTAGAAGTCAGTCCAGTCAGCACAGCTGCCACGAGTAGGAAAAATAGCAGGTCTGGCTCCAGATCATCTGAAATGTCTGCAGGTTCCTCGATGATTTTACCGCCTATTACCAGTCAAAGAATTCCAGATCCTCACTGTAATAACGACAGTAATAGTTTACTGCAAGAACTCAAGATACAGCTATATGGATTTGATACAGCAAAACTCAAAGATGCATACCTGCATTTCACTGGTTTAGATTCAACTGTGTCTGGGTTTGTAGATGCTGGGCAAGTTAAACAAGTGTTTTCCAAGTGTAGAATACCTATCGATGGTAAATATTTGAATGCACTTTTGTCCAAGTTCATGGCAGCAAGAAGACCAAATTGGATCAACTACGAGCAAATGTTGAAGTATGTTAACGGTGTTGTGAGAAATGAAGAAAGGATAGAAGGACGTGTTCCCACTCTTGATTTCAGTTCCAATAATTCACCAGATGAGGACATTTCTTTAAAACCCAATCAACTGTCTCCACACAGTGTGAATGACGGTAGTACGACTGGTAGACAGAGTACAATGCTGGTGAAGCATGCATTTCAAGATCGACAGGACGCACATCTATTGGTGGAAATGGAAAGACTTCTGAAGCAAGTTAATAACATCAATGAATTAATTTGGAGCTTGAAACAAACACTCAATGATAGCGATCAGAATAACAACACGATGATGAACACACAAAAGTTGAAGTCCATTTGCCTCAGACATCATGTACCATTCAATGGTTCATTACTGGACAGAATTCTGGACAGATTTGACCCTAGAGGTTCTGGTAAAGTTGACAGGACAGACTTTATGACATTTGTAGAACGAGCAATGCCTTTGAGTTCAGCTGGCAGCCCAGAATCTAGTCACAGCCAGTCACTGCATAGTGTAGTGGAGACACCCCCCACTCGGCCTAGCTGGGAAACACGACAGCCATTACATGCATTATCAAAACGACAGCAAGTGATTCCTAGGGCTGCAGCCTTGGAGCAAGAAGAGATGTACAACGAACAGAAAAGGCTATTAGATCAGCACTTGCAAGACCAAAGTCAACAATTGTCGCAAGTCCTAGACAAACATCAACGTGGCCTGGACAAAAGGCAAAAAGCACTTCAAACAGACCACATAGCACAGTATGGACATCTGAGCAGAGATCTCGATGAAAGTAGAGTCCCACAACCTCCTGAACACGATGTCGCACAGGAGCAACAGGAACTAGAGGAAAGACAGAGAAAGTTATTGCAGCAACAGTTTGAACTCACTGAACAGAAGAGAAAAATAAATCAGGAACAGAAGGAACTGGAGAAGTACATAAGGGATGGTGATGGAGCGGCATCAACTGAGAACATGGAAGAAAGCCATGTGAAGAGCTTCCTGCGTCTTGCACGTGCATTGTTTATGTATGATGGCAGTGGATCAGGATTTCTTGAAGATGACGCTATTAGACGATTAGTTACAAACTATAACTTAGTCTACAGACTTGATTTTAGCTCTGATGTCATCGATGACGCTATTGATACAAGTAGTACTGGTGATGGTATGCCGAGGGCAACAAGGGAGCTGATAGTCCTGACAGCACAAGTTCAACAGAATTCTATAAATCACCCAGCCAAAACAGGAAACTCCAAAAGAAAGTTCAGTGTATTTCATGCAGGGTTTTACAAGCGATCTCAAAGTGTTGACAAAGGTAGATGGTCTCTGTCACCTTTAAAGTTAAAAGAACTTAAAGCCAAAGCTGCGCGTTCAAATAGTTTGACTGGTTCTGAAAAACCACGTTGGTCGCCAACCTTAAAACTTAAAGAAATACGAGAAAAAGGTGCAGCTGATAATCTAACAGTTCACCGTGTGCTAGAGTCACCATTGTTAAAACTAAATGGCGCAGAGTTTCAATACCACAGTAACGCCGAAACGTCGTCTGACAAGGAGCAAACAGAGACGGAGGAAGAGGACTGTGTATTTAATGCTGCTCCGATGGTCGATCAAGAAGATATCATAGCCTTAACATACCATGTTCGAGCTTTCTCTGATGCTCTTGGGGTGTTAAGGAATACATTCTTCGAACAATCAGAGAGTCCAGAAGACAAACCTCCAGAAGTAAAGGCTCATGAAAGGCTAGGGGAGGTTCTGTCCATCCTAAAAGGGGTCCTTAACCAATACCAGCCCCTCCATTCTACGGACATACTTGCCGCAGCAGGGACCTTGATTAACAAAGTTAAAAGTCATAACTATGAGGAGTCTGATCAAGCCCCTGAAGAATTctgtgagtccattgaccaactggctttggccttcagtagcagTGTATCTGACTTTCTGATGGGAGACCAAGATATTCCCTTATCTGCCTCTAGGGAAAACTCAAGGTCTTTGGAAGATTTCGCAgatgatgatgaagatgatgaaatggaagaagatgatggcgatgacatggatgatgaccaggatgatgaCTATTACAGGGATGACAGGAGAGGGTTCGACAAAAAGGAATCCGCTATCGATAAATCTGCCCAAAAAGCAGACGAGTTGGACAAGACTTTGTTTGGTCTGGAGCATGGCGTTGACCTGACGCTACAAAGAACTAAAGTGTGGTCCAAGTACGCTAAAGATATCGCTACGTACATAGAGAGAAGAGCTCATCTAGAACTAGAATTCACTAACAAGCTTGCAAAACTAGCACAGGCCACAAGAGCATCCATTACTGAAGATCGGCATCTCCCATTTCAAACTATCTACGTGACGTCACTGGATCAAGACATTGATTACGCTGATAGTTGTGCTCGAACGTACAGCTCTCTATTATCGTCAAAGTTTCTAGAGCCTTTACAAAATAGACGCTCATCTCATGAGAAAAAGCGTAAAGACTTGAAAGAAATATGGACAAAAGCCTATAAGAAACTAAATGAGGCGATTGTAAAGCTTGAGAAAGCCAAGCAAACGTACATTCAAAAACAACAGGAGATTGAAAAGTTCAAGTCCACCAACGATACCAAAGATGGCCAGGAAATGTCGTCGTCGTCTACTCGCACGACTAAAAAGAAACAAGATGACGTTCGTAAGGCTGACGAGGCCGAGGAGTGGTACAAACAGTGCGTCATTGAAGCTAACGTGCGACAACGAGAATTACTTAAAACCAAGTCTCACGTTCTGGTGGAACTCAGGCAATTGATTTACCAGTGCGACCAGACCATGAAAGCAGTCACCTGTAATTTCTTTCATCTAATGCATTCCCAGTCCACCCCGGCCCCAATTCGTTTCCAGTGTTTAGCCGAGACTAGTCGTACATACGAACCTGGGTGTCAGTTCTCTGACTTTGTATACGACCAGCAAGCAATCGCACAGCCCACAGTAGAGCGAGAATTTGCATTTGAACCCTACACAAGTTCGGACAAACTAAGTTCTCCGACCCGAAACAACTTCGAAGCTCGCACAATGCACTCGCCAACCCAAGAAATTGGCCGGACCTCACCATTCCATACTACTGGCCGTACGAACAGTCTACACCTTAGCAGTTCTCAACCAGTCAAGGCTTGGGGTCACACGCTCCAAGATCATATGAGCGATGCCGAGAGTACCGGAAGTAAATCTGCTCCCGTCACGCCGGAAGGCAGCCCGGTAACCAGGCATAAAAACCTTCACCACGAAGCACTGAACGAGGATTCGTCTGACGATGAATCTACTACTGAAGTCGAGAAAGAGGTCCGTCCCAGCAAAGGCAAGGGTCGTAATGGGTCTGGTCCTTTCCAGAATGTCCGCATGTCAGGAGCAGCGAAGACTCACAAGTTCAAGAAACTCCGCGCGCCTTCTCGATGTCGGGATTGCGATAGCTACGTGTACTTTAATGGCGCTGAGTGTGCGGATTGCGGGCTCACTTGTCATCGAAAATGCCTAGCGAGAATAATGAATCGCTGTGATAAAAAGCGAGGTTCTGGTAGTCGAGCTTCGGATTATAATGGTGGCAGACGCATGACAACCTTTGGTGTCGACTTCTATTCTCATTTAGAAGCCACACATAAACAGGACGAATGTGTGCCTTACATTGTGTCACTGTGCATCAAGGAAATTAACAATAGAGGTCTCGATATTAAAGGGATCTATCGAGTTTCTGGTGTTAAATCAAAAGTTGAAAAAGTTTGTCAGGTATTTGAGAACAGTAGCGGTGCAGTGGATTTAAGTGGCATACCACCCCATGTCATAGCAGCTGTATTAAAGCTATATCTcagacagTTACCTGAACCTCTCCTAACATACAAACTCTACCCAGAATTTATCAAAATAGCAAAGGAGAGCCTGGATGTAACCAACTTAGGTGACGAAACGAGCAACGAATACAAAGAAGTACTGCGCAAGCTCCGCGAGGTGGTAGTCAAACTTCCCAGGGCAATCTTCAAAACAGTAGCCATGGTTATCAACCATCTTAAACTCATCTCCAAGAACAAGGAAGAGAATCAGATGTCGGCTTGTAATCTTGGCATTGTGTTTGGACCAACGCTGCTACGCCCTCGCGAGTCAGCGACTACCGACTCCATTTCTATGTCGGCGTTGGTGGATATGCAACACCAGACCAAAGCAGTTGAACTCCTTATAAACAACCCACAGGTCTTCGATACTCCAGGAGTCGATGATCCAGCCTCGCAAGAAACACCAGTAGAAGAGTTTGGCCGCGACAAAAATCAACCGATTCTAAGCGATGTTTGCAGTGTTCGTAATCGAGATCCGAAATCCTCGCAAACTGGAAATAACATTACAGCCGACGGTTCAAGCTCTGACACACCACGCGATGACCCCAATGATCTAATTTCCGAAAACCTGATTGAACCCGAAAAGCCGGTCAAACCGGTTCAACCAGATGAACCAGTTGACCCCAATACTGAAGCCACTGACAACAAACTTATTACTCACAGGACTCCTTCAGTTTCCCACTCTTCTGTTTCATCGTCTACTTCTTCGCCATCGAAGAGTCTTGGCTTTGACAATGGGTTTTTGGATTTGCTTGCGAAAAGCAACAACCGAACGGAGAACGAGAAAGATCAAGAGTACAGCATACCTGAGTTTTTGCTACCGGGAAGCACTAAAGAACAAGAGAATGATAAAGATGCAGATGATAGTTATGATGATAGTACTACTCAAGGAACCAGTGGGTTTTGCACTCCAGACGATGACCTTGACAGCTCTAGAGGAAGCATGAGTCGAGATGATTTTAAAACCGAAGACTCACCACCTTCCCTCACTCAGAACCAAGCAATTTCTGTCTTGCCTTCGTCCTTCTCCATGCCCGACATTGCTGTCATGTCACGTAGTTCGTCAACGTATTCTGCTGCTACGTCAATTAGCTTTGGATCTGATATGCCAGATGACATGCTTCCAGACTTTTCGGAACCTTCCGAGTGGGAACCGAAAATACCCGACATCCCGCTCGAGAATACTTCGGGTTACGTTCGACCATATCCGAAGAAAACAGTCGACGATTCATCGGTGCCAAGCCGAACACATCCTCGGCCAAACGCCCTTGGGTTGTTTAAGAGAAATTCCGATCTCCCTGGAATGATGTCACGTCTTGGGTTCTTTCCAATCGCGAGCAAGTCCTCCAGCAGTGAGACAGATATCTCCAAAAAGCCCCCAAGGGCTTCAGAGGAGGTGTTATTGAATCCTGGATCCTCTCACAAGAAGCGGCAAGGCATAAGCGAGGCCCTTCGTGAAATGCACATCGTTTACGATCCCATTTTACAGCATGCGGGCAAACCTaaggacaccccagagaaactcgaagacaccccagagaaactcaaggacaccccagagaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacacgccagacaaactcaaggacatcccagacaaactcaaggacaccccagacaaactcaaggacaccccagacaaactcaaggacacgccagataaacccaaggaaccccCTGGAGCTGAGGATGTGGAGACCGAGTCTACTCCCTTCCTCCAGGAAACTCCAATTGTTGTGAAAACATCTAATGATAAAAATACTGAGCCGAAAGAATGGTACATCAGCGAACAAAATGACATTCATGAAATGGACAGTAAAGAAAATACGATTGAATTTGAACCGGCTGAAAACCAGGAGTCCAGTGAGGTTGAGAATATTGGTGGCACAGGGAGCCCGGTCGTGTTTGAAGTCGAACAGGAAGAACAGAACGAAAACACTGTTGTTTCTGAACTTGAGAGTTCGGGAGACCAAACTGTAGACGGAAGTGAGGAAGCTCAAGATCCAGTGAGAGAAGAGGATTATCGTAGGGATAGCAAGCCAAAAAGTCCAAGAGAAAAGTCTTTAGTTAATGAAATATCAAACAAAGTCTGTCAGTCTGAAACCAACGCCAAAGGTTCCACCCAAGATAAAGTCAGCGGAGAACCTCTACAGAAGATGCGTTCTCCTCGTGTTTCCGTGAGAGACAGACGAAGACAATACGAAAAGACACCGGACAATGACGAACAGACTTCGGAAACATCCGTTGCAAGTCCGAAACCCCAATCTCCGATTGGAAACTTCAACATTGCTTCACGAAAGCAGATTTTTGAAAGCATTGACAAAGGCGCCAAGAAGGACACTTACAAAAAGCTCAGTGATATCTCGAAAAAGGCTAAAAGTAGTTCATTAAATGCCTCTAAAGAAGATCTTGACCAGGTAGAAGAAGCAAGCTCAGTCTCTGTGCTTAACTATGAAAAACTCGAAAGACTTGAACACAGTTCGCGAGCGGAAGTCAGCGAAGAAAATAGCAGCTCCAAAGTTGAAACAATAAAAACAATAAAACTAGTGTCTCGAAGGGTAGAAATCTCATTGGACGATACCACAAATCACCATGACAACGAAGAACCCCAAAAGAAACAATTACGCGCCACGAACTCTTTTCCATTAACACGAACGTCTCCGAAACCAACCCGAAGAGCACGACGACAGTTTCCCGAAGATAACACACAGGAAGACCGTGAGCCGCAGTTTGTCTAG

Transcript

alvinactis_v1_g21149

Protein

alvinactis_v1_g21149

MAGFAPFGRDDQPLLDVKIVGGKRLEIVVDRYGKPLNKDNKPKGSESRFSRSLSEERNIQNCNSSQSPSVPPWIRGVTPPNKMLKPLEVSPVSTAATSRKNSRSGSRSSEMSAGSSMILPPITSQRIPDPHCNNDSNSLLQELKIQLYGFDTAKLKDAYLHFTGLDSTVSGFVDAGQVKQVFSKCRIPIDGKYLNALLSKFMAARRPNWINYEQMLKYVNGVVRNEERIEGRVPTLDFSSNNSPDEDISLKPNQLSPHSVNDGSTTGRQSTMLVKHAFQDRQDAHLLVEMERLLKQVNNINELIWSLKQTLNDSDQNNNTMMNTQKLKSICLRHHVPFNGSLLDRILDRFDPRGSGKVDRTDFMTFVERAMPLSSAGSPESSHSQSLHSVVETPPTRPSWETRQPLHALSKRQQVIPRAAALEQEEMYNEQKRLLDQHLQDQSQQLSQVLDKHQRGLDKRQKALQTDHIAQYGHLSRDLDESRVPQPPEHDVAQEQQELEERQRKLLQQQFELTEQKRKINQEQKELEKYIRDGDGAASTENMEESHVKSFLRLARALFMYDGSGSGFLEDDAIRRLVTNYNLVYRLDFSSDVIDDAIDTSSTGDGMPRATRELIVLTAQVQQNSINHPAKTGNSKRKFSVFHAGFYKRSQSVDKGRWSLSPLKLKELKAKAARSNSLTGSEKPRWSPTLKLKEIREKGAADNLTVHRVLESPLLKLNGAEFQYHSNAETSSDKEQTETEEEDCVFNAAPMVDQEDIIALTYHVRAFSDALGVLRNTFFEQSESPEDKPPEVKAHERLGEVLSILKGVLNQYQPLHSTDILAAAGTLINKVKSHNYEESDQAPEEFCESIDQLALAFSSSVSDFLMGDQDIPLSASRENSRSLEDFADDDEDDEMEEDDGDDMDDDQDDDYYRDDRRGFDKKESAIDKSAQKADELDKTLFGLEHGVDLTLQRTKVWSKYAKDIATYIERRAHLELEFTNKLAKLAQATRASITEDRHLPFQTIYVTSLDQDIDYADSCARTYSSLLSSKFLEPLQNRRSSHEKKRKDLKEIWTKAYKKLNEAIVKLEKAKQTYIQKQQEIEKFKSTNDTKDGQEMSSSSTRTTKKKQDDVRKADEAEEWYKQCVIEANVRQRELLKTKSHVLVELRQLIYQCDQTMKAVTCNFFHLMHSQSTPAPIRFQCLAETSRTYEPGCQFSDFVYDQQAIAQPTVEREFAFEPYTSSDKLSSPTRNNFEARTMHSPTQEIGRTSPFHTTGRTNSLHLSSSQPVKAWGHTLQDHMSDAESTGSKSAPVTPEGSPVTRHKNLHHEALNEDSSDDESTTEVEKEVRPSKGKGRNGSGPFQNVRMSGAAKTHKFKKLRAPSRCRDCDSYVYFNGAECADCGLTCHRKCLARIMNRCDKKRGSGSRASDYNGGRRMTTFGVDFYSHLEATHKQDECVPYIVSLCIKEINNRGLDIKGIYRVSGVKSKVEKVCQVFENSSGAVDLSGIPPHVIAAVLKLYLRQLPEPLLTYKLYPEFIKIAKESLDVTNLGDETSNEYKEVLRKLREVVVKLPRAIFKTVAMVINHLKLISKNKEENQMSACNLGIVFGPTLLRPRESATTDSISMSALVDMQHQTKAVELLINNPQVFDTPGVDDPASQETPVEEFGRDKNQPILSDVCSVRNRDPKSSQTGNNITADGSSSDTPRDDPNDLISENLIEPEKPVKPVQPDEPVDPNTEATDNKLITHRTPSVSHSSVSSSTSSPSKSLGFDNGFLDLLAKSNNRTENEKDQEYSIPEFLLPGSTKEQENDKDADDSYDDSTTQGTSGFCTPDDDLDSSRGSMSRDDFKTEDSPPSLTQNQAISVLPSSFSMPDIAVMSRSSSTYSAATSISFGSDMPDDMLPDFSEPSEWEPKIPDIPLENTSGYVRPYPKKTVDDSSVPSRTHPRPNALGLFKRNSDLPGMMSRLGFFPIASKSSSSETDISKKPPRASEEVLLNPGSSHKKRQGISEALREMHIVYDPILQHAGKPKDTPEKLEDTPEKLKDTPEKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDTPDKLKDIPDKLKDTPDKLKDTPDKLKDTPDKPKEPPGAEDVETESTPFLQETPIVVKTSNDKNTEPKEWYISEQNDIHEMDSKENTIEFEPAENQESSEVENIGGTGSPVVFEVEQEEQNENTVVSELESSGDQTVDGSEEAQDPVREEDYRRDSKPKSPREKSLVNEISNKVCQSETNAKGSTQDKVSGEPLQKMRSPRVSVRDRRRQYEKTPDNDEQTSETSVASPKPQSPIGNFNIASRKQIFESIDKGAKKDTYKKLSDISKKAKSSSLNASKEDLDQVEEASSVSVLNYEKLERLEHSSRAEVSEENSSSKVETIKTIKLVSRRVEISLDDTTNHHDNEEPQKKQLRATNSFPLTRTSPKPTRRARRQFPEDNTQEDREPQFV*

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCS4	Rho GTPase-activating protein 29 OS=Danio rerio OX=7955 GN=arhgap29 PE=2 SV=1
Q92619	Rho GTPase-activating protein 45 OS=Homo sapiens OX=9606 GN=ARHGAP45 PE=1 SV=2
Q3TBD2	Rho GTPase-activating protein 45 OS=Mus musculus OX=10090 GN=Arhgap45 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002273 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF20743 all species →	DUF5580_C	Family of unknown function (DUF5580) C-terminal domain	Domain	Interproscan
PF17743 all species →	DUF5580	Family of unknown function (DUF5580) N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR049247 all species →	Domain	DUF5580, C-terminal domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051025 all species →	Family	Rho GTPase-activating	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR048316 all species →	Domain	DUF5580, N-terminal domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15228 all species →	SPERMATHECAL PHYSIOLOGY VARIANT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g21149.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →