Gene detail

Detailed information of alvinactis_v1_g21289 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:6144850...6188113
NR annotation: XP_031564902.1, LOW QUALITY PROTEIN: transcription activator BRG1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21289

ATGATTGGCAAACAACCGCCTAAGATACTATCCACAAGTGGTGGTGGGGCCATGCCTAGTAATGTCAGTCCAGCACCCCCACAAGTGCCTACTTCTAGTCAAACGTCTACAGCCACTCCAGCTACACCTGCTAGTGTTGCTCCTAATCAGACAGCTTATAATGTACCAGGGATGACACAATCACAAAAGTTACAATCCACCATCAGCAAACAGGCTGGTTCAAATGTAAGCCAGGCATCTGCTGCTGCATCAATGGCTGCTGCAAAGGGTGCTGCCGCTAGTGCAATCGCAGCTGCTAACCAGCAACAGAAGCTTAAAGAACAGCAGCGGCAGGCTTTGGCCATTCAGCAACAACAACAACAGCGCAAATCTCAACCACATTTACAGATGGCCAAACCTCAGCTGGCTCCTGTTCCTAAGCCAGCAGGCCTTGATCCAGTGGCGATACTCAAAGAACGAGAAAACAGAATTCAGGCCAGGATTGTGCAGAGAATTAAAGAGCTTGAAGGTCTCCCAGGAAATCTCCCTGATGATTTGAGAATCAAAGCAATGATAGAATTACGAGCATTAAGACTCCTTAATGTCCAGAAACAGCTGAGAGGTGAGGTTATAGCTTGCACAAGAAGAGACACCACACTAGAGACAGCACTGAACTCCAAGGCATATAAACGTAGCAAGAAACAGTCTCTGAGAGAGGCTAGAATCACTGAGAAACTAGAGAAACAACAAAAGATGGAGCAAGAAAGAAAACGCAGACAGAAACACCAGGAGTATCTGAACATGATACTGCAACACGTACGCGACTTCAAGGATTACCACAGGTCTATTCAGTCTAAGGTTGTTAAGCTAAACAAGGCTATCATGAACTTCCACTCGATCACAGACAGGGagaagaagaaggaagaagaaaggattgagaaagaaagaatgagaagaTTGATGGCGGAGGACGAAGAAGGATACCGTAAGCTTATTGACCACAAGAAAGACAAACGTCTACACTACTTGCTTAGTCAGACTGACGAATACATTGCTAGTCTGACCAAGATGGTCCAACAGCACAAGAAAGACCACAAGAAGAAACAGAAGGGACGAATCAGACGGAAGTCAGACTTTGACGACGAGACTCCTGAGGGTGACAGGCATGTTGCTGTAGTTAATACTGAGACTAACGAGGTCTTGAAGGGTGATGAAGCACCGACGGCAGATGAATTGGAGGATTGGCTGACAAACCATCCTGGATATGCAGTAGCCCCAAGGCAAGAGGATGACTCAGCtgatgaagatgatgaggatgaggatgaagatgacgaGGCATCAACTACAAAAACGTCATGGCAGAGACTATCTGAAAAAGAGAAAAGAAGAGAGATGTATGGGAAGGATGATGTTGGGAGTGTAACTACTGATGCAGCCCAAGATGCCGTAAACTATTACGGCATGGCACACAGTGTCAAAGAAGCTGTCCTGGAACAACCTAAGTTACTTGTTGGTGGAACACTGAAAGAATACCAGGTGTTGGGTCTTGAATGGATGGTATCACTTCATAACAACAACCTGAATGGAATCCTGGCAGATGAGATGGGTTTGGGTAAAACTATTCAGACTATTGCTCTGTTTACTTACCTCATTGAAATAAAGAGACTTAATGGTCCCTTCCTGGTCATTGTACCACTATCAACTCTATCCAACTGGGTCCTTGAGTTTGAAAAATGGGCACCATTTATCGTTCTTGTCAGCTACAAGGGCTCACCAAATATGCGCCGATCAGCTGCAGTAGTTCTTAGAACAGGAAAGTTTAATGTGGTGCTGACGACTTATGAGTATGTGATGAAGGATAAGTCTATACTTGCCAAGGTGCATTGGAAGTATATGGTCATTGACGAAGGTCACAGAATGAAGAATCATCACTGTAAACTAACTCAAGTCCTCAATACACATTACTCTGCACCACACAGAATACTGCTGACTGGTACACCATTGCAGAATCGTCTTCCTGAGTTATGGGCTCTTCTCAACTTCCTACTTCCTACCATCTTCAAGTCTTGCAGTACGTTTGAGCAGTGGTTTAATGCGCCTTTTGCTATGACTGGAGAAAAGGTTGAACTGAACGAGGAAGAAACAGTTCTCATCATTAGGCGTCTGCACAAGGTTCTCAGGCCTTTCCTTCTCAGACGCCTCAAGAAAGAAGTAGAGTCACAGTTGCCAGATAAGGTTATAATTACAATCAAAACTAAAACTCAaagagatcaatgttggaacaatgcaccagcgatgtctgatcaaaatctaatttctcctccagtttcttctattccaaaggagaattcagtgtttgatcacatgtcactgttattgcaccctttcaaGATTGTTATGTTGTTTGTCCATTATTGCACATCGCTAGACCCTGGCAGGATTGTCCACGTGATCGTCAGGCGTAGATCATGTGCTAAAGTAAAACCCAGGATTTCGCTAACACCATCAAAGCAGCATGTACTTGTTGTTTTATGA

Transcript

alvinactis_v1_g21289

Protein

Uniprot

Uniprot term	Description
P51531	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Homo sapiens OX=9606 GN=SMARCA2 PE=1 SV=2
Q6DIC0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Mus musculus OX=10090 GN=Smarca2 PE=1 SV=1
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07529	HSA	HSA domain	Family	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF07533	BRK	BRK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006576	Domain	BRK domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014012	Domain	Helicase/SANT-associated domain	Interproscan
IPR037259	Homologous_superfamily	BRK domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan