Gene detail

Detailed information of alvinactis_v1_g21315 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:6759488...6771654
NR annotation: XP_020914741.1, organic cation transporter protein isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21315

ATGGGCCTATTTTCGCAAGACAATGAACGTATGCAGAATATAGAAAGAGAAAAAGAATATCTGACGCAAATAAAAGATTCTGTTGAGACGACTATTATTCTCAAGAAGGAAACCGCTGGACTGGGAATCCAGATTGTCGGAGGCGCAGATACTTATTTGAGAGGAATCGTCATTAAGTCTATCGAACAGAATGGAGCCGCGAACAAAGATGGACGACTTGAAGTCGGAGACCAAATTCTTGAGGTAAATGGAGTCAGTTTAGAAGACCTATCCCACGAGAGAGCCGTGTCTGCCGTTCGTATGGCTTCGTCTCCAGTACGCTTATTGGTGTTTAGAGAAGACCCTGAAAAGATATTTACATCGAAAGAAAATCCAAAATCGCTGATAAAAGTTCGTATTAATAAATCGATCAGTGAATGTCTTGGACTTAGTATTCTTGCAAGAAGAGATGGCAATGGAGTATTCGTCACATATGTGGTGGATGGAAGCGCTGCCGATATGGAAGGTACAATACAACAAGGAGACAGGATAATAGAGGTCAATAACGAAAACTTACGTAACGCAACACAAGAACATGCAGCACATATACTTAAGCGTTGCTATGGTAATGTAAAACTCACAATAGGAAGAATACCGTCGTTATGTTCGTCTATAAAAGCAAGCGTAAACTCCCGACGACCATTTGGTTATGTTAACCATGGACTCGACCGAGAAAAAGATAGCACCCCTCGAAGATATCGCGCGGGAAGTCATGGACTATACGATTTGACGAACAGAGCCACATCGACACCAAACGATGAGAATCGGAACATGGTCGTAACGCCGAAACAAAGACGAAGCATCACGATGTTAGAAACGTCTATACAAGGAAATACTCGTGTCAACGGTAATGTGAGATATGGCAGTGATGATTTGGGAGTGTTTGAGGTAatgataatgatgatggatataagacgacgtgaaggtaatgatgattttgatgattgctggtttgcacctgacggcgtcgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaaataacaagggcTTCAATGGCTGAAGATCGCTCCCAAGACAAACGCGGGCGCGAGTATGATGACGTATTCAAGCAAGTCAAATCGTTTGGTCGATATCAAAAGTTTCTCTATGGCTGGTTAAACCTGTTGGTTTTCCCGATCACCGCCCAGTTTGACGCGCTTGTGTTTGCTGTTGGTACACCAGGCTTTCACTGCGTCACTGCTAATGTCACGTGTCCCAAGAAACAGTGTTGTGACGAGTGTACTTCGTATGTGTTCGATGGGCCTTTTACAAGCTCTGTATCAGAAtggaacttgatatgtgaccgcgcgtacctgggtgctactgtccagtcctgctactttgcaggaatgctgattggttctttgacgacggggatgatatcggacgcctggggccgaaagaattgcatgttcttctgtaATGCGATTATGCTTGTGGCAGGCGTTGCCTCGACGTTTGTTGACTGCATCTCATTCTTTGCATTCCTACGCTTCGTGGTTGGGTACGGTCTTACAGGGTCCATGCTTGCACTGTACATCTACAGCTTAGAGTTGGTTGCACCAAAGTACAGAACAGCTGCTGCGAACCTCGTTGACTTTTTCTACAACGGCTCTTCCCTTCTATTCACGTTGATCGCCTATTTCGTACCTGATTGGAGGATACTCATGTTAATCACAACTGCTCCAGCTGTCTTGCTGTTCCCATTTTGGAAGTGGGtgccagaatcacctcgatggctcgtcgcccacaatcgcttagacgaagctcttgatgcaatcaaaaagtatggaggcaaagacgataatccgatcgattcagaagaattgaaaaacgttttggaagaagtgaggcgtgaacagatagcgaagcagaaaaaggataaaaagttcacgataatcgatcttgttcgtactccgaaaatgagaaagtggtcggccatagtttgttaccaatggtaa

Transcript

alvinactis_v1_g21315

Protein

Uniprot

Uniprot term	Description
Q8NI35	InaD-like protein OS=Homo sapiens OX=9606 GN=PATJ PE=1 SV=3
E2QYC9	InaD-like protein OS=Canis lupus familiaris OX=9615 GN=PATJ PE=1 SV=3
Q63ZW7	InaD-like protein OS=Mus musculus OX=10090 GN=Patj PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00083	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005828	Family	Major facilitator, sugar transporter-like	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24064	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08202	SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5	-	Transporters	ko02000	deepkoala