Gene detail

Detailed information of alvinactis_v1_g21325 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:6875487...6889992
NR annotation: KXJ16056.1, Dystrophin, isoform E [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21325

ATGCCTGGTATTGAAAGTAAACTGCCTGAAGGATGGGAACGCTCTGAAACTACTAGTGGAATCCCTTACTACATCGACCATGAGACAGAACGCACTTATTGGGATCACCCAGAAATGGTGAAATTGCTACAAGAAATTGTTGCTCTCAATAATATCAAGTATGCAGCATACCGTACTGCTATGAAGCTTAGAGCGATACAGAAGAAGACCCAAATGTTTTTATTGGAGCTTCCAGTCATCATAACCACATTACAAGAAGAAGATGTACGGGATTGTTACACAGAAAAAACCTTAACTGCATCAGATGTGCACAGAATTATTACGGCAATGTTTATCAATCAAAATGGTGACAGAAAAGACTTCATTGATATCGCAATTGCAAGTGACTTAACATTTAATTGGATTCTTAATGTATTTGATCAAGGGCGCACAGGATTTATACAGTCAGTTTCCTTGAAGGTTGGACTTTCATTTATGTGTGCAGCGAAAGTTCAAGATAAATACAAATATATATTTAGGCAGCTTTGTAACAGTAAAGGATGGATGGACAGAAAGAGACTGAAGATGTTCCTACAAGAAGCATTACAGATTCCAAAGAACATTTATGAAAGTGCTGTTTTCTGTGGAACAAGTGTTGAGCCTGCAGTAAGAAACTGCTTTGAGAGAACTGGAGCAGTCATGGACCAATTAAACCTGGAAGATTTCCTTGAGTGGATGATCGCCGAGCCCCAGACTATAGTATGGTTGCCAACACTACACAGACTGGCTGTGTCGGAATCCGTTAAACATGAAGCTAAATGTAACATTTGCAAGATGTATCCCATAGTTGGATTCAGGTATCGCTGCTTGAAGTGTTTTAACTTTGATCTTTGCCAGGAATGTTTCTGGTTAGGGCGTACAAACAAAGGACATAAACTAGGGCACCCAACACAAGAGTACTGCTTGGCTCCATCACAAAAAGAAGACATGAAAGACTTTGCTAAAGTCATGAAAAACAAAGTGAGCAAAAAGAAGAAGCCAGGTGATCCTTCTAAAGGAAGGTACATTTCTATCACAAATGAAGATGCTGCACCATCGTCTGATGACGAATATTCTGTTGATGCTCCTCCTTTAATGTCCAAACTGAATGCTGCAACACACGATAAACTGGGCTCTTATGCAGCAAGGCTTGCTGATTATGATGAGATTGATAGCAAGTCCAAAGACAGATCTCCCAGATCTCCCAGACATGATCATGATATGGATGAGAGATTGATTCATAATTATCCCAGTTCTAGACATGGGTTGTCTGCAACGCCCTCTGAACTTGAAACTACTCTCCAGCTTCGCAGCCCTGCAGAAATGCAACCAGGTCTAGATCTGAGTCAAAGTGATGAATTGGAGGATCTTATATCTAATTTGGAGGATGATAATACagcgttacgtgATGAAATCGATCACATTCACCAGCTGCAACTGCAGAACCTCAGCCTTGATTCGCAGCATTCCTCAGAAGAAGCAGAGCGTCTTCGGCAACGAAAGGAACGTCTTTTGGCGAGAGAAGAAGTGTTGGAGTCACACAATAACCAGTTGGAGATCCAACTAAATCGTCTTAGATCGCTGTTGCATCAGAATTCACCTCGTACATCACGGCGGTCCAAGCCTTCTGAGACTATACGTTCTGTAACGATACCATACCAACCCAGACCTTTACCAACAAACACCACCACAACCGATAGCCAAATACCAGGATTATATATCCACCAACCTTCGGCTGTACAGCCCCATGGAAATCAAGACATTGAACCTACCAGACAACCAGTCGTCTCGTCTCCTGTAACACATGTTGGTCGTGCTAGGCAGAGTCCCCAGACAGATAATCAAGATTACAATATGTTGTACACATCGCCAAGACAGGCGATTGATCCTTCTCGTTATGGGTTTAACAACAATGAGAATACCTCGTACGAGGAAGCAGAGCTGCAATCTATCGTGGATCGAATGGCCAGCTCTTTTCCTCTCAATGCTGAATCAGATATTTCAATGGAAATACACAGCGACTTGTTCCAGGCAGCGTCGATGGTTGGTGAAGCAATGCAATTACTGGTGACAGCGGTCTCGCGACAAGGGGGTGTGTATCTTTCACGTGTTTATACTTATTTCCAGCTTTCACTGTTGCTAGACTCCTTTATTACTCTACTGTGA

Transcript

alvinactis_v1_g21325

Protein

Uniprot

Uniprot term	Description
Q7YU29	Dystrophin, isoform E OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=1
Q9VDW3	Dystrophin, isoform B OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=3
Q0KI50	Dystrophin, isoform D OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09069	EF-hand_3	EF-hand	Domain	Interproscan
PF09068	EF-hand_2	EF hand	Domain	Interproscan
PF00397	WW	WW domain	Domain	Interproscan
PF00569	ZZ	Zinc finger, ZZ type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015154	Domain	EF-hand domain, type 2	Interproscan
IPR015153	Domain	EF-hand domain, type 1	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR043145	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR050774	Family	KCMF1 and Dystrophin	Interproscan
IPR000433	Domain	Zinc finger, ZZ-type	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0099536	Biological Process	synaptic signaling	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan