Gene detail

Detailed information of alvinactis_v1_g21519 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:9638107...9655463
NR annotation: XP_028518035.1, ribonucleoprotein PTB-binding 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21519

ATGGCCGACGAAGCGAAGGTTAAAGTTGAAAACGACTCTACTCGGGATACTGTTAAAATCCCTGCAACATCGCTCATTAACCCAGAGAAACTAGAGAAATTCAAAAAACTCGAAAGAGCCAAGGAAGAATTCGCCAAAGGACGCAAAGTTGTGCTGAATAACATACCTGATGGCGTAGATTTGGAGGATTTGAAAACTACAATTATGCAAGGACTTAATGCTATAGAAGTAAAAATAGGAAAGAAGTCAGTTGTCATATCCTTCAAGAATGCTCCTGATGCAGAAAAAGGAGTAACAACTCTGAAAAGCCTGAATTCCGATTTTCAAGATCGAGGGATTACGGTCATTATCCCACAACCTGACAGCCTTCTTTTTGTTGGTAATCTTCCTCTCGAATTCACCGATGAAGAGTTCGAGAAGCTCATGAGCCAGTATGGAACACTTGAGAGGGTGTTCCTCGTCCGAAGTGAAGCAACTGGAGAAAGCAAAGGTTATGGGTTTGCAGAATTTTTGGATAAGAAGACAGCAGGAGAAGCGAAGCAACAGTTGCTGAACAGCGGGGCCAAATACATCTCAGGCAGGATTCTAAGAGTTGACTTTGCTGAACCTAATCTTAATAGCTATAGTGAGTTGCACTCCAAGACTTTGTTTATTGATAAGCTGCCAAGAGATTTTACAGATGGAGAGATGCTTAGGGAGTTGTTCAGTAGGACAGGCACAGTCACCTTTGCCCAGGTTGGTATTAGTCCCCAAACTGGGTCATCCAGAGGCTTTGCATTTGTGGACTATGCTACTGGTGACGAGGCAGAGAAAGGGCAAGCAGCCCATAATGGTGCAACTATAGGCAGTTGTAATATCCGTACTGCATTCGCCACTCCAGGGCGACTAGGTGCCAGCATTGTGGGCAACAATCTCTCTAACATGCTGAGATCCAAACCAGTTTCACTGATGTCAGCCATCTCTCCCAATGCATTGATAAGACCACCGCCACCGCCACCGATGCTACAGATGAATATGCATTCACCCAGACCTCTGATGGCTTCACAGCCTTTAATGGGATTTCACCCATGGTCACCAATGGGGATGATGAGAGGTCCAGACCCTAGATTCCCCATGTCAATGATGAGACACATTGGACCATTAGAGTTCGGGGATCCAAGAGCTGCATTTTTCCAAAGGCCAAGAGGGCTTAGACCTGGGATGTTACAAATGAATGGTCCACGCCCACCAGCACCCATGGGTGTCTCTTCACCTAGAGGACCTCTACCACTGATGACCAATGTTCCCATGAGACAACCATACCCGAGGCCAATGGTTCCTAGGGCGTTTACTCCTAAAGGGATTTCTGCACCCCCTCCTGGCCCTATAAGTGGCCCTGCAGGATCTTTAATGACTGCAAGCAATAAGGGAGTAGTACAGCAATCTGAAGAGATGAAAGGTACCAGTGGACAAATAAATCCACAAATGAGACCACAGATTGACCAGATGTCAAGTAACAAAGACGGATCAGCATTGACTCAACCATCACAGCAATCTCTCATGTCATCCCAAAATCTTCAAAGCAATACATCTCAAGGATCACAAAGGTCTTTGCTACAGTCCAAATCTCTGTCAGCAGAGACAAGAGCCCTTGTAAATCAGTACATGGGTTCTGCCGGGCAATCTCTGTTAGGGCCGTCACCTGGGGTTCACCAAGCACAGAGTCATACAGGGCAGACACATGGGGTTCTCCATGGGCAGAGTAGTCTCCATCAACCAGTTGGAACAGCCGCGTATGGAAATGGTGCTAGTACTGGAACATCAACTCCATCACCTCTCATGTCTGTGACCACTAAAAGTAGTACGCAGGTCGGACTACTAGGGTCGTCCTTCCCTAACAACAGCCAACAGTATGGTCTGACAGGTGGACAGTCATATTCTGGTCAAAACACCACATCTGTTCAACCTACAGGGTATATTTATAATCAGACCCAAATCCAGAATCTCGGCCAACAGGGTACTGGGATGAGCCAGTCATCATTGCTAGCACAACAAGGCAGCTATCAAACAGGCTACCAACAGCAGCAACAAGGAATGGGGTACTATAGTCAGCCTATACAGTCACAGATATACCAGCAGacatcagcagcagcagcaacaacaacaacatcaaACAGTTGGCAACAACAGTCTTCCATGCAGTCATTGTACAGTCTAGCACAACAACAGGGATCTCAACTTGGTGTCACACAGTCTGCCCAAAAGCGACCCATCGACTACACATCCAACACATACCAAACCCAATCAGCTAGTGACTTGTATGATCTATTCTATGATGCCAACAAGCGACCAAGATTCTAA

Transcript

alvinactis_v1_g21519

Protein

Uniprot

Uniprot term	Description
Q9HCJ3	Ribonucleoprotein PTB-binding 2 OS=Homo sapiens OX=9606 GN=RAVER2 PE=1 SV=2
Q7TPD6	Ribonucleoprotein PTB-binding 2 OS=Mus musculus OX=10090 GN=Raver2 PE=1 SV=1
Q5XI28	Ribonucleoprotein PTB-binding 1 OS=Rattus norvegicus OX=10116 GN=Raver1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan