Gene detail

Detailed information of alvinactis_v1_g21628 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:11031729...11048281
NR annotation: XP_020911420.1, trichohyalin isoform X1 [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g21628

ATGGATGAGGATTTAAAGCATGTGATAACGGAAGAAGAAAGAACAAGACACGATGCTCTGTTTTACAGTCAAACTCCTAAAAAAGGCTTCTTGTCGGGAGAGCAAGCAAGATCTCTGTTTATACGTTCAAGACTACCTCTCTCCGAGCTCAGCAAAATATGGAAACTTGCTGATATAACGAGAGACAACATGCTAGATGTCTCAGAATTTGCCACTGCGATGCATCTGATTCAGTTACGACTAAGAGGTTTTGAAATCCCGGAAAAGCTGCCACCATCACTAGCACCTAGCAGTGTACACAAACAAATAACTACTATACCACAAATCACAGAACAGGATATGAATGTCTACCAAAAGACATTTGAATGGAAGGATAACAACAAAACAGGATTCATTGACACTGATGCATCTTGCAGTATCATGTTATCATCCAAGTTAGAACCACATGTGTTAGCAAGGATATGGGATTTGTCTGATATTGACCGAGATGCAAAGCTCTGTGCGTCTGAGTTTGCCATTGTACTACATCTTTTACGATTCTGCAAGAAAGGTAATGGACTCGAGGGAAGCATAGATGTGAAGTCGCTTTTACCAGCTGAGTACATCAAAGATGACGGCGAAGCAAAGAAAAAAAGACACACGGAAGTTCAAACTGAAAGAAGAAAACTTTGGACATTGAAGCAAAAGCTTTGTTCTGAGATGACTGGTGGTCTTGATGAAGAAATCGTCAATGAGAAAATACGTCCTGAGCTAATCAAAGTGGAGGAGAAACTGTTCGCTTTGGAAAAAGAAGAAACAGAACTGAGACGAGGTTTGTTGAATTTGAAAGACAAGTCAAAGAAAGAGAGCTTCAAACCATTTGACCGGAGTTTCTTACTGAAGAAGCGAGTTTGTGGTTCAGACTTGTTTAGAGGGGACAGACAGACCTATCTTGGTAAGGACAGCGTTGTCTTTGAGAAACTTTGGACCGCGGACGAATTAGAGTTTGACAACATCGTATCCACCAAGGAAGAGGAAGACCGACCGACATCGAGTTATAACGGCCTCAGCAACGACTCTTCCCAAACCCAGCCTACCGACATTGTTTTTTCTGAAGTGAAACGCGACAGCAAAACAGCAAACGACACTCGAGAACTCTCGAACGGTGTCGATTCGCGGGTGGATAACAGCATCGATAGTGGTAGACTCGATTCCAGTGCAAGGCTGATTTCGACGAGAGAGGCAAGCAGTTCTACATCGAGATCCAACCAGACGGAGACCAGGAACACCGACTTGATTACCAAAGATCGCCAGAAGGAAACACAAGAAAGTCCAGGAAGTACAGAAGGAAAACAAGTAGAACGAAACGACTCCTTTTCTTGGGCTGCTGTAAAAAGGAGACCAGTTATTTGCCAAACAGTGAGCGAAGAGGTTATAGATATGCCGGAAAAAAAGGGCGAAGTCGTGGAAGAATTTGTTTCTGTCGAGCATAAAGACAGTGGATCCAAGACCACTGAATTGGATGAGCAGTTAAAGCTCTTGGAAAAGGATTCAAGTGATCATGTTGATATCAATCAAAACTCTGGTCCTTTAATTGAGGCTGAGGTCACTGTTGAATCAGTAAAAAGGGTGGAGTCAGCTGCTCACCAGGATCTTGATATTGTCTTTGATGAGTTGCCAGAGGTAAACCATAGTGCAGTGAATGGAACTGACAGCGTGAACAATGTCGAGAAAACTGGCAGCACCAAGTTGCCTGTTGGAAGGGTCCTTTCCAACGAAGAAGAGAAGGAGCTCATTGAGTCTGGTGCCTTGAAAAGAGCAGAACGAGATGTCCATCCAAGGAACCAACCAACACAAGAAGAACTCTTACCTATGTTCTTGGAAGAAAAGAGGAAACTGGAAGAGGAAAGAAGGAACAAAAGAGAAATCGACGAAGAGAAGATACGTCAAGCGAGAGAGGAGCTCAAGAGGCAAGAGGAGGAGAACAAGGAACAGTTAATGATGCGAAAGGCTGCCATCCAAGAGGCCAAAGGAATACTCGAAAGGCAGATATCCCAAACTGAACTCTCAGTTCCTAGATCAGACGGGGGACGCTTGATTGAACACGAATTCGAGGAACAGAGAATCAGAGAAGACGAAGCTCGCCAGAGGATGGAACAGTTCAAAAGACAACCACTAAATCAACCGAAACCTACAGAAGGCGGAAGTAAAGTACACCCCAAACAAATCTACATAGAATCGATTCCAACTGAAGAGAGTAAGCCCCATTTCAATCCTCCAGTTGTGAGGCGACAAAAACCTGAACAAAATAAACGAAGTAATCGAAAGAGCTGGGTCGAGCTTGAAATCGAGCAGCAAAAAGTAAAAGACGAGGAAATGCGGCGGGAAAGAGAGGAAAGGCAGCAAGAGCTGGATCGATTGGGACAAGGACAAAGACACTTTCATTCCATTCAACGGGATATTGAAATACCTGAACAGCCCATTGTTAGCAGCGGTGTAAACGTGGTGCAGGCATCTCAATTCTTTTCCACACCCCCAGCGAACAAGGGAGCTGGAGTATCTACCAAGGAAGTCAACAAACCATCTGCAAGTAGTAGAGTCCCTGAGAATGTTCCAAAGAGCAGCATTCATAGCGTGCAGAAGATACCTTCCAGTGCACGAGCGAGTGATGTTCGAGATGCTGTCGATGGGAATATGACGGCAGAGGAAATCGAAATTGAGATGAAGATCCAGGAAGAGGAAGAGAGGCGGAGATTGGAACAAATCGAACAAGTACGCCTGGACTGCCTCAGACGAGAGGCTGAAGAACTGGTCCGAGGGAAACAAATTCGTGAAGAGGAATTGCGCAAGAAGAGAGAAATACAATTAAAAGAAGCCGAAAAGAGAAAGAAGGAAGAGCAGGAAAGACAGGTGGATTCATTGAGAAATGCAGAACACAGGCGCCTCAACTTTGTCGCTGAAAAAGTAAGGCTTGAAGAACGAGTTATTCGAACTATGAAAGAATCACACATGCAGTCGGATACCACAACCGTGAGAACCTCAAGTGTAAGTAACGCTCAACAGCCAGTTGCATCACCACCGCCGTCAGACAATGGAGAAGTGCGCGAAAGAAGATCATCTGTCCGTGATGCCAAAGCTTTGTTTGAAAGACCCACAGTGACCCAGGAACAACCCAAGGTCGTCATGCGTCAAAAACGTCAGTCCCTCAATCTGGACGACACGCCCAGTGTAGTCAAACCACACAAGAAAGACAACAGAGCTTCGTTTCATTCCGACACCGTTATGACTCAGCATTGTCATTCGAAGTCTACCAATGAAATACAGATTATTCACATGGACGAGGCCCCGGATGAAAAACCCACTCGTTTGGCTTTAGGTGACATTGCACAAAAAAGACAACAATTCGAAACGCGCCAAAGTTCAGTCGAAAGTCGCCAACCTGTTTCTGCACAGAATCAATCTCAGTCTCCTCGGGTCACGGATCACAAAGATCAATCCGCAGCTGATACTGGTTCGTTTTTCCCATCCATTAAAAATAACCGAATTCAAAAAGAGATGCAAGAACTCAAGCAAAAGGAAGAAGAGATCCGGTTAAGAAGGAAAGGATTGGAAAGGGCATCATCGTCTGAGCAGGATTCTTTGGATGGCATTAAGAAGAATCCCCTTCCTAGTAAGATGCAGGTTAAAGCGCCTGCTCCTAGTGTGCCTGTTTCCAAGCAAGAACCGGCCCAGCTAAGATCAGCTCCAATAAAGAGAAACCCGGCTGTACGAAAAAGCTTTATAGAGATGGAAAAagaacgcgaacgagaacgagaagaagctctgcatagagaacgagaaGTGGTCATGAAAGAAAGAGAAAAGATGCTTACGCAAAAGGGGTCAGAACAGGGAGCGCAAAAGGGTCAACAACCAAAGGGGGAGAGCAACAAGAAACCAAATTCAATGGCTGGAAGATGGCAGTTCAAATAA

Transcript

alvinactis_v1_g21628

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HGL2	Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC800.10c PE=4 SV=1
Q5E9R3	EH domain-containing protein 1 OS=Bos taurus OX=9913 GN=EHD1 PE=1 SV=1
Q9NZN3	EH domain-containing protein 3 OS=Homo sapiens OX=9606 GN=EHD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005926 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g21628.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.