Gene detail

Detailed information of alvinactis_v1_g22360 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:21495155...21537550
NR annotation: XP_020911462.1, protein Hook homolog [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g22360

atgatatcatcgtgttcagaaataaagacgttcgaggagctcctaaagcaactacgacaagtcatcctcaggttgcgagagtctggactgaaagtgaaaccaagcaagtgtcatctgcttcgcgacggtgtacctttcctggaacacatcatcactaaacatggtgtcgcaacagatcctgagaagCTCAACACTTTTGAGAGGATCAAAGTTCCACATTCTACAGCAGTTGAACTTGCAGATGGAGTAGCATTATGTGAATGTTTAGCTGAAATAGCACCAGATTGGTTTGATGATGAATGGATGTCTAAAATACGTGGAGACACTGGGGATAACAGGAGATTGAGGTTAAGTAATCTCAAGAAGCTGCTTAAAGGAATTCAAGATTACTATTCAGAGGTACTTAGTATGGATATCACTGGTTTTCCTATGCCTGATGTCAATATCCTAGCTGATTCACCCAACAAACCTGAACTTGGTAGGCTGTTACAACTAATACTGGGTTGTGCTGTTAATTGTGAGGACAAACAAGAGTATATTCAAGTTATTATGTCGATGGAAGAGAGTGTCCAGCATGCCGTAATGAATGCCATCCAAGAGTTGATATCAGCCAGAGAGATGTCAGGTGTAAGCAATGAAATATTTAAAGAATTAGAAGTCCAGCATAAAAGAACATTAGATCAGTTAGCCATGGTAATGGTAGAGAAAGAAGAATTATCACAGCGTTGTCATGAACTGGATGAACAGATAACATTCCTGAGAGAATCAGAAGCCAATCTACAAATAGAGAATGACAGAATGAAAAGTCACATCAGCCAGTCTGATTTCAGAATAGACAGAGAGGAAGATGGATATCCCAACCAAAAGTTGAATCAGATGAAGCAACAAATTGATGATTTGAAGGAGGAAAATTTTATGTTGGAAACTGCAAAAGATGAATATAAAATAAAATATGAACAACTGGACAGAGACATGGAAATCCTCAATGACAGGAATGAGCAACTGCAAAGCCTTGCTGAGGAATCACAGCAGTTAAAAGATGAGATGGACGTCTTGCGGCACATGCAGGAGAAAGTTTCCAAGTATGAGTCTACCATTGATATGTACAAAAAGAAGCTTGAGGAATTGTCTGACATGCGTAAACAAATGAAAGCTTTAGAAGAGAAAAACATGACCTACATGCAGGAAACCATGAACCTGGAAGAGGATCTTCGAAAAGCCAATCTTCTGAAAACCCAACTTGATACATACAAAAAACAGGTGCATCAACTACAAGTTCAAGTGTCAGAACTACAAAGAAGGACAGACAGGGCTGAATTTGAGGCCAAGAAAGCCAAAGAAAAACTAGCAAACATAGAAGGAGATAATGAGCGTTTAAAACATGAGAAGGAAAACCTTAAAGAACAGATTGAAGAATTAGAACTTACACAAGCAAAAGGTTCATTGTCTATGACCCCTACCTCTCCACCAAGTAGTGATGCCTTCTCAGACATTTCACAACTGTCTCTACCTCCTGAAGTCAAAGAGAAGATTGTTAGACTTGAACATGAAAACAGGAAGTTGAAAGCACATAAAAAGGATGAACAACATGAACAGACTCAACTTCTGCAAAGTCTTCTTGATGACGCAAATGAAAGGAAAGACCAGCTTGAAAAAGAAAACAGGTCACTGAATCAACGCATCATGGAGATTGAAAGTGAAGTAGATGATCTTAGAAACCAGCAAAAGGCCAGTGCTAGTGACCAGGACTCTGAGTTGGACAAGAAATATAAAGTACATTTGGAAAAACTCAAAGAGGCCAATGAGCAACTACAGCAAAGGAAAGcatacattgatagcctggaacctaaagtatccagtagtgCTGAAAAGGTGAAAGAGATGGAAGAAATATTGTCCCAGAAAGACCATGAGATGAAGGCAATGGAGGATAGATATAAACGCTACCTTGAGAAGGCTAAAAGTGTTATTAAGACACTGGATCCAAAGCAAAGTCCTAACACTGAGATCACAACACTACGGAGCCAGGTCCATGAAAAAGACAAGCTCATTGATCACTTAGAACAAGACCACGAGAAAATGAGGATAACTCGAGAAAGAGAAGAAAAACTAATCGTCAGCgcttggtatgagatgGGCATGCAGCTTCATCGTAAAGCGTCCGAGGATCGATTACTTGGAAATACTGGAGGAATGTCCTTCCTTGCTCGACAACGACAAGCCTCAAGTCGAAGGTCTACTCCAACCAGAACACAAAACACTGCCGTTACGGCAAGGTATTAA

Transcript

alvinactis_v1_g22360

Protein

Uniprot

Uniprot term	Description
B6MFW3	Protein Hook homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_281537 PE=3 SV=1
Q8BUK6	Protein Hook homolog 3 OS=Mus musculus OX=10090 GN=Hook3 PE=1 SV=2
Q6GQ73	Protein Hook homolog 3 OS=Xenopus laevis OX=8355 GN=hook3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05622	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan
PF19047	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR008636	Domain	Hook, C-terminal	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16536	HOOK3; protein HOOK3	-	Cytoskeleton proteins	ko04812	deepkoala