Detailed information of alvinactis_v1_g22859 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_12:4688076...4693835
NR annotation: XP_031557155.1, tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like [Actinia tenebrosa]
Species abbreviation AIDSS · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4IGH4tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Danio rerio OX=7955 GN=wdr4 PE=2 SV=2
Q9EP82tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Mus musculus OX=10090 GN=Wdr4 PE=1 SV=2
A7E3S5tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Bos taurus OX=9913 GN=WDR4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006013 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028884
all species →		FamilytRNA (guanine-N(7)-)-methyltransferase non-catalytic subunitInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16288
all species →		WD40 REPEAT PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0036265
all species →		Biological ProcessRNA (guanine-N7)-methylationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006400
all species →		Biological ProcesstRNA modificationInterproscan
GO:0043527
all species →		Cellular ComponenttRNA methyltransferase complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15443TRM82, WDR4; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82-Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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