Gene detail

Detailed information of alvinactis_v1_g23373 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_12:14222752...14234365
NR annotation: RUA04431.1, hypothetical protein DSY43_06255 [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g23373

ATGATTAAAAAGATCGCACCTCTGTCGTCCTCGCAGAAGAATGAAAGTATCAACAGTGTCATGGGCACAAAGACACTGAAAGTTCGCTACTATGGTGGGAGTGCCAGTAATGATGTTCGCATTGCCGCAGGTGTTGCACAAGCAAACAAAGGTTTATCCATTGATATTGGGTCCTTGGAGGACGATATAACAAAAGTACTGGAGGAAGTAACACGGGAGGATGTGAGGAATGCAGAGAGAGCTGCTGGCCAATCGCTCATCTGTACCACCAGTGATATCCATACTACTCCCTTGAAACAGCCCCCACGTGACTCTGTAGTACTTTTCTTTGATCTGGAAACAACAAGCAGGAAGAAGGACTGCGAAATACTTCAGTTGGCAGTGGTTCGAGAAAATCGAGGTTGTGTACTGATTGGTCACAACGCACGCGTGTTTGATACGCCTCGCCTTATCGAACAGTTATCTCAATGTGGCCTAGTTGATAGCATAAATGCAAGACCTGTATTTGTGGGTGATAGTTTACCCTTACTCAGGAAAGAGGCGTGGCTTGGCAAATCCAAAGCGCTTGGGGCCATCTACCAACAAGTAACTGGCAATTCATTTGCAGCCCACGATGCACTGGAAGATTCCGTCGCACTGCAAGAGGTCATGTTTGATGATCGTTTAAGGGTTTGCTTGCAATCGACAATTGCGAAGGCTCTTCCGCTGAAGCAAGCGGTGCGCGAAGACAACGAGAAATGTGCCACTTCAGAGAGGCAGGCAACCTTCTCCAGCCTGGAGAATGCGATTACCAGTTACATGATACAAAAGATAGCGAAGGCTGGACTCAGTTACACCGCCCTGAAAAAAGTCCACAACGACCTAAAAAGTGAGGCTGTTGGCAAGGCAAGTAGAGTTCCCTACCAGAAAGGAAAATTTAAAGTACATAACTTGCCAGAGGGTATTGCATTCAAACGACCCTATGGCTATGGTCGTAAACAACGATTTATGATCATGGAGGCTAAAAACCAAATCAGGTTTGAAATTCTGAAGCCAGAAATTGGTGTGCCTCAGGAAAGTGATGGCTCAAGGGAAACCATTGACCAAGTGAATCCATTGACCAAATATCTACTACAAATGAAGAAGCACATAAGCAATTGTCCAAAGTTGTGGATCCACAGGACTATTCACAAATCACCTATCAGTCAAAGGGATTTCAGCAAGGCCCAAGCTATATTGTTGGAGAAACATTCGGAAGAAACTCTTTTGTGTCTGAAAAGGCTTTCTGATGAATATAAATCAAAGACGAGTGATCATGAAGGCGAATTCAAAGTAGAACACAAAGGGTTTTCCCTCACAATTTATTGCAACAGTGCACAAGAAGCTGCAAAACAGCTTGGTGTATATCTATACCATAAAGGATGTTTGTCTCCATATGAGAAAGGAAGTGCCTCACAAGTAATTACCGTGAATTCTTTGTCTATTAATGCGAAATTCAATTCGTGGTTTCACATGAAATCAAGTGGTGAAGTCGAGATTATTGTGGAATCTTTTTATGTGAAAGTGAAGTATGTTCCTGACACTACAACTCCATTACAAGAAATCACCATTCCCAGTGAAGGCCTCCACGTTCAATTGAGTGATTCAGAAGATATGCCACTGTATGCTCTAAGAAATGTATTTGGCCTTGATGAATTTAGACCCATGCAAAGGGAAGCCATAAAATCTATCACTGACGGTCAAGATTCTTTAATATTGTTGCCTACAGGATCTGGAAAGACTATCTGTTATGCAATCCCAGCATTGATAATGTCTGGTATTACAATTGTAATAACCCCGTTGTTGGCATTATTAAGTGATCAGGTCAACAAGTTAAGATCGAAAGGAATAAATGCCTGCTACACAAGGTCCAGCATGTCAGATGAGGAAAATGAGTCTGTTCTTCATGAACTATCACAAAAAGATACCTGTTACAAATTGTTTTATTTAACTCCAGAAGCAGCCATCTCAGAACGAATGATGAGACACTTCCAAGAAATGGATAAAGCAGGTGTTTTTGGAAGGATTATAGTTGATGAAGCACACTGTGTAGACACATGGGGATCAAGCTTCAGACCAGCTTATGCACAACTTAGCTGCTTACGTGCATTCAACAAGCCATATCATGCATTCACTGGTACTGCTACATCAAGAACTCAGAGGGTAATCATAGAAAGGTTACAAATGGCATCAACAACTATTGTCATtcttttgccatcagaaagaaaCAATCTCTTTTTTAGGGTTATTCCTAAAATTGATCAGAAATCCAAGGATGACATAGTCACATTAATTACAGAAGACTATACAAATAAATGTGGTATTGTGTACTGTAGCACACGTAGAGATACAAAGGATATGGCATACCTATTGAAAGTCAAAGGAATCAGTGCCGTTCACTATGATGGAGCACTTGATGATCTGGAAAAGGAGCATAACTCACGTGCCTGGTTAGATGGCAAAGCAATTGTGATGTGTGCCACAAAAGCCTTTGGAATGGGCATTGATAAGAACGATGTTAGATTTGTTATTCATCATACCATTCCTGAATCTATGGAGGACTATTTTCAAGAAGCAGGTCGAGCAGGCAGAGATGGATTACCATCTACATGTATTCTTTTGTATAGGTTTGAGGACAGATCTAAAATCCTCAACTCTATTAGCAGAACAGAAGACCCAAATCATAAACATCTTCAGAAGGATATGTTGGATAGTATTGTGAAATACTGCATGCTAAATCATTGCCGCCGAGCTTTCATGTTGTCATATTTTGATGAGACCACTGACATGACTCAACCATGTGGCAATACATGCGATAACTGCCAGAACCCACAACAGACAGTGCCTAAAGATTATACTGACttaaagtgcttatga

Transcript

alvinactis_v1_g23373

Protein

Uniprot

Gene family

Uniprot term	Description
Q9FT70	ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B PE=2 SV=1
Q8L840	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1
Q9DEY9	RecQ-like DNA helicase BLM OS=Xenopus laevis OX=8355 GN=blm PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	GTF2I

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF16124	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF02946	GTF2I	GTF2I-like repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR036647	Homologous_superfamily	GTF2I-like repeat superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001763	Domain	Rhodanese-like domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR004212	Repeat	GTF2I-like repeat	Interproscan
IPR032284	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10843	ERCC3, XPB; DNA excision repair protein ERCC-3	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala