Gene detail

Detailed information of alvinactis_v1_g24264 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:2057385...2072179
NR annotation: KXJ22034.1, putative uncharacterized protein, chloroplastic [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g24264

ATGGCGGAGCTTCTTGTAGATTCGCAGACCAAGTCCGCCGTAAAGAAGCCTATTATTGCGAAGAAAGTGTTATTTGTGAAGAATCTTCCTTATGATACTAAAGATGATGAGTTTGAGAAGGCATTCAGTGATATAGGACCTGTTAGAAAGTGTTTCTTGATCAGGGAAAAAGATTCTTCTAGGAAATGCAGGGGTTTTGGATATGTGACCTTTGCTATCGAAGAAGATGCGCAAAAAGCCAAGGACACCGTGAAAACACTGCGAGGCAGGCCACTGAGAATTACATTCTCTGAGAAGAAACCAAGACAGAATAGGAAGAAAGAGAGTAGCAAAgatgacaagcatcagtctgtaggtgatgataatcaagatcatgatgatgatgatgatgacaacaatgatgatcttaataatactaatgaagatactaaagAAAAGTCTCCTGAAAAAAGAAAAAGAAAACCCAAATCTGAAAGATCACAGCCTGAAACAGACTCTGGTCGAACTGTTCTTCTGTTTGGTTTACCAGCTACAATATCATCCAAAGAACTCTACAAAAGATGCCGCAAAGTTGGTGAACTTGAGAAGACAGTGTTTCCACTTGAAGACAGAAATGAACCAGTGGCAGCATTGACCTTCAAGACACCGATAATCGCAAGATCTGCCACAAGTAAACTAAACCACAAGACTATTAAAGGCAAAGAAGTTATTGCAGTCCTAAAATCCAAAGAACATAACAAACAGTTAAAGAAATCGAAATCATTGAAAAAGTCCAGATTAATTATTAGAAATTTGTCATTTAAATGTACAGAGGGATTGTTAAGAGAAGTGTTTTCTCAATGTGATGAGACACCGGAGGTTCATATTCCTATGCATAACAAGCATAAAAGGAGTCAAGGCTTTGGTTTTGTTCAGTTTTCTAATGTATTTAGTGCAGCAAATGCACTGAAAGAAATGAATTTGAAGCAAGTTCTTGGTAGGCCGATGGCCGTGGACTGGGCTGTGTCTAAAGGACAGTATGAATTGGTGCAGAATTCTAGAGAAAGTGAGAATGCCTGTAGTGCAGAGGCAGCAgacagtggtgacgttcatgaaaatcagggaaacgacaaagaaaatggtgaagacaaaagtgatgatgatgatgacagcgatgatggtgatgatggtggtgatgaatctcccaaaaaatcaaGGATCACAAAAGGAAGAGAGATTGTTATGGAGAAAGTGAaagaagacgatgaagaagagagtgatgatcaagatggagatgatgacgaCgaggaggaggaggaggaggaggagaaggaggaggaAGAAGCTCAAAAGAGCACCAAAAAACCTTCTGATGTCAAGGAAGGCCTAACACTATTTGTTAGGAATGTCAATTATGATACCACTGAAAAGTCTCTTCACAAATGTTTCAAAAAGTATGGTGACGTGGCTTATTGTAAGATTGTAACAGACCCTGTCACAGAGCACAGTAAAGGAACAGCATTTGTCAAGTTTAAATCTTTAGAAAGTGTCAAGAAATGCATGGATGGCAATGCTGATGGCGATGCATTCTTCCTTGATGGTTATAAACTTCAAGTAGACATTGCTGTGACGCGAGGCAAAGCTGAACAACTAAGGCAAAATGACAAGGATTCTAAAAAAGAACCCAAAGATAAGAGAAACCTTTATTTGGCGCGTGAGGGTGTCATTAGTGCAGGATCTGAAGCAGCACAGGACTTGACTAAAGCTGATCTACTAAAGCGACAAAAAGCAGAAGCAGAGAAGAAAGCAAAGCTTCAGAATCCAAACTGTTTTGTCTCTACAACAAGACTGTGTGCACGAAATTTACCACTGCACTTAACTGAAGCAGAACTTAAGAAAGTTTTTAGTACTGCTGCTGCAGGATCTCACCAAACACCTGCTACTGTCAAGAAAGTATTGATCATTCGCAGTAAAGAACGAGTTGACAGCACAGGACAAGGCCGTGCTCTAGGTTTTGCCTTTATAGAATTCACCAATCACAAAGATGCCCTCGCGGCATTACGATCGACCAATAACAACCCCAAGACATTTGGACCTGATCGAAGACCAATTGTTGAATTTTCGATTGAAAATAGCCTCGCTTTGAAGACGAGGGAGCAGAGATTGGTGAGAAGTAAAAGCAAACTCAAGCAATCAGATGAGGGACCAGGAAACAAGACACACAAAGAAAAGCGCCAGGAGAAGGCAATCCAACGGAGAGAGAAAAGACAAGAGAGGAAGAAAAGGAAGACAGGAATGGAGGGCAACAAAGACATAAACTCTCCAAATCAAGATGGCAAAACAGATGCAACACAAAAGCAACAAAAAATCAAAATTACCCCAAAGAAATCCATTACTGAGAAGGCTCGACCGAACACGAAAAAGAGCTTTTCAAAGAATTATCCAAAGTCTTTTGGTAATAAAAACGTGAAGAAGCCAATCACACAAGCAAGCTCTGAAACCCCAGGAAATGAGCTTCCTGTTCGAGGTGTAGTTAGAAGTAACAAGCGTAAGGCTAAGGATACCAAGGAAGAGACAGAATTTAACATAATAGTACAAAAGTATAAAAACAAGTTGTTTGGTGAGACGGATTCAATTGCTAAGCGAGCCAGATGGACAATGGGTGATAAATCATCAAAAGACAAAAAGGTTGTGCATTGCACCACATCCCGCACACCAACGTCAACAACAACATATGATAACAACCTGtcTTACGGCCAGGAAGTTGTGGTGCCTTTGAAACATTCAAGTCATGTGAGCGTCAACATGAACAGGGATTCCTCGCGTGCCCAATCCTATGGCCAAGAATATGTCAGGTGGTTGGAAAAACCGTTACAATCCTCAACTCATGACAGAGTAAGGACCAAGTATCCATCAGCTGGTCAGTCTAGTAGCCAAGGATATGACCAACGTATGGGATCGCAATCATCCTCAGACAAATCAGACATGCTTGTCACAACTACAAGCCCATGGCATGACAGAGTAAAGACCAAGGATTCATCAGTTTATGATGTCAAACAATCAGTATTGGAAGAACATGCACATATGAAGGATGATGACAATGAAATTCAAGGGCAACATTACTGCAGGAACGAAAACAAAGGAGAACTAGAACCAGAAGAAGCGAATGATGGAGATGATGGCCAAAAAGAGAAAACACCCCACAAAGGCGGTTGCGATGAAGAAATCTATGAAGAGAGAGAAGAATTAGCCGGCgatcatggtcataatgatcgtggcagtgatgtggataatgataatgatgacgacgatgatgatgacaatgatgatgatgataatgaggacgaagataatgatgacgaagatgatgataatgatgacgaagatgatgataatgatgacgacgatgatgacaatgatgataatgaggacgaagataatgatgacgaagatgatgataatgatgatgatgaaaaggaaatggaggttggagacaacgaAGTAGTTGCAGGAATagaagatgaagagaagaagaaggataatatagaatatcatggtaaaaaggacaagaacgaaaacgaaaatagaagCAAACTTACACCGAGAACCGAACAAGACGAAAAGCAGAATAGTAGTGGAAAGTCGGATAAAACCGATGCTCTTCAGAAAGATGATGCTCCAAAGACGACTGAAGTGCTGGTTAAGATAACATTACCGACAGCGATGGATTGGCAAATAGTATCAGATGACTTGAAGAGCATAATGAGAAATATAAAATTCAAGCTCAAAGAGAGAAGAACCGCAAGTCTTCACCGAGATAACTTCTGCATCAGCTTTACAAGCAGGAAAATAGCAAAGAATGCAATGTATCTGATTAAAACCCGACGAAAGTTAATCAAAGCAGATCTCTGTGAAAATCTAATCGAAACGTGTCTCAAAGAGATTCTGGATGAAAAGGTGACGGCGCTTGCTATTCATCAACGTAAATGCGATGAGATAACACACAAGATAATGGCTTTGCAAGCGGGAAAGAAAAAGAACCCAAAGAAAAACAAATTTCACAGCGTAGAGGAGTTTGAAAAGCGTGAAGCGTTGAAACAAATAGCAAAGGAAGTGAATGGTCAATCGACAGAGTTTGCCAAACTCATTGAAGAACTAGTCCAACATGTAGACAGTTTAAAGACAACCCAAGATAAAGATGTTTCTGCAGATATAAATGGTATCAAACAGCGTCTGCAGAGGGAGAAGGACAGGATTGTTGGTGGTCTTCCAATTTACGCAGAAAAGAGTCGTATCATTAAAACCATCAAAGAGCATCAAGTTTGCATTATCTTGGGAGAAACTGGTTCTGGGAAAAGTACTCAAATCGTTCAATATCTCTATGATGCTGGATTTGCAGAGAAGGGAACCATTGTTTGCACACAGCCACGGAAAGTCGCTGCTTTCAGTCTTGCAAAGCGCGTGTCTGAAGAACTTAAAGACACCAAGCTCGTTGATTGTTTAGATGGCACTAGAGGAAACAGAAAGTCTTCTAAGATCTTGTTTACGACTGACCACACCCTCTTAATGAAATGCATCAGCGATCAGGATTTGTCACATTTCTCATGCGTTATTATCGACGAGGCGCACGAAAGAAACATTAACACTGATCTTCTTCTGGGGATCATAAAGAAAGCACTCCCAAGGCGCCCAGACTTACGTGTTATCGTTACCTCGGCCACAATTGATCCATCGCTGTTCAAAACTTATTTTGGTGGATGTCCAGTGATCAAAGTTTCCGGCAAGCTTTTTCCTGTAGAGATCGAATGGAAAAGAAAGCAGCAAGAGGATTCTAAACTCGACAAGTCAAAGGATTACGTTGTAGAAGCTGTGAATAAAGTGGTTGAGATCCATAGAACCGGCGAAGAAGGAGACATCCTTGTGTTTCTTACATGTCCAGCCGAGATTGATCGTGCTTGCAGCAGTGTGCTTAGTAAAACTACAACTAATGATCTCGTCTGCCTGCCATTACATGGTAAGCTTCAACAAGATGACCAACGAAAGGTATTTGACCCCACCCCTCGTGGGAAACGTAAGGTCGTGTTTTCCACTAACTGTGCCGAGACATCGCTGACAATACCAGGGATCAAATTTGTAGTAGACAGTGGCAGAGCAAAGGAGATGAAGTACGATCCGAAACGAAACTTGAATTCCCTAGAGGTGTCCATTATTAGTCAGAGTTCAGCGAACCAACGTATGGGTAGAGCTGGAAGGACGGACAGTGGGAAATGCTTCCGTCTTTACACTGAAGAGGATTTCAATGACATGGAAAAGTCTTCCAAACCTGAAATTCTGCGTGTTCATCTTGGACAAGCCTTGCTCAAACTCATGGAACTCGGTATAAGTGATCCTGCAGACTTTGACTACGTCGAGTCTCCACCACGTGACTCTATCACGGCAGCAATGATGGAGCTTGTAGAACTAGAAGCAATAAAAGATGGCAACCTCACCGAGCTTGGAAGAAGAATGGTTCGAGTTCCTGTAGATCCTCGTCTTGCTAAGTTCCTTTTTGAAGGCTTTAACCAGGGTGTTGGCTACGAAGCTCTTATCCTGGTCTCCGTGGCAACTGTAAACGGCAGCGTGTTCTTCCGCATGGGGACTGAGGAAGAGAAGAAAGAAGCTGATGTTAAGAAGTTTGAATTTTGTCATCTTGGAGGCGACTTCATGACTTTGTTGGGCGTCGTAAGAGCATGGCTGAAGGTCGATGAGAGAGACCGCAGTAGATGGTGCTGTGCTAAGAGTTTGAACGCCAAAGCAATGCGTATGGCTAATGAAACAGTGAAAGATCTGAAGGCAACTCTTAAACGCGAACTGAAGCTTGATAACATTCGCTGGGCAGCTTTTGATGAAGAAACTACCGACAAAATTGTCCAAAGGACCCTGTTTTCATGCTTTCTTACAAAGCTGTGTGTCTACACAGGACACGAGAGATCAGGCTACCAAACAGTAGTTGGAGGCCATTATGTCAAGGTTCATCCTTCGTCGGCTCTAAAGTTCATGGGAGGGTTTCCCAAGTTTGTTATTTATGAGAAAATTTTGAAGACGTCTCAAGATTTTATCCTGAATGTAACACCAATCGAGGAACACTGGCTCAGAGAAACCATGGCAGATACAAGCCTTCTTCGTGATGCTCAACAACTCGTGGATGAAATGATGGTGCAGCGTACAATCATGTGCAGTCGAGCTTTGATTGACAAAACGTTGTTGCCATTCAAAGAAAAATTGCCTCAGCTCGAGTCACGAGTCTCTAAATCATGCAATGGTGCACCAGTTGCTGTAGAAGTGAACAAACAATGTGGCATTGTAGACGTGTTCATCTCGCAGAAGTACGCAGAGAAAGGCATGGACATTGTTCAATCCAGCTTGGAGGAAGGTAGGAAGAAGCTTCGTGAGGAAACTTTGGAACATGCAGTGGAAGGCTTATCTTCATTAAGAGTCGTAATCCAATCAGGTTTAACAGTGCAGCATGTCTTAATGCCGGGTATGTACCGCACTGTAATTGTGAGAGACGTTTCACACTACACGCAAGACTTGTATGACTGTATGATCACATTTGGTAAAGTTATTGACATCGGGTTTTCCAAGCAGCTAGCTTTTGTAACTTACGAAAATCCTGAGGATGCAATGTCAGCCGTTCATAGTAGCAAGTCCATGGACTTCGAATGGAGTTACTCCATTCAGCCGAAGATGAACAGGCAACAACATGAAATGGCAAACAATTTCAATTTCGTTGTCAAAATAAATTGGCTTCGACGAGAATCAAAGGATATGGCCAATGCTTCTTTTGAGAGATGCTGTGCTACAGTACCTTGGTATGACTTCCCTTCGCGATGGATTAGAAATGTAGTGATTCAATCAAAGAAAGCCACTGTAAGTGCAGACAAGTTCCACCCAGATTCCGTATTTATACGGAACCTTCATCCTTCTTCAACCAAGCTGGATATCAAGCAAGCTCTCCTGGAGATCTTCCCTGACACTCCTGTCGAAGAGTCCAACATCATCATTCAGTACAAGCCAAGAGAAGGAGTTAATATTGCAGCACAAAGCCAGAAAAGTGTACTTGAAAGATTGATTTCTAAACATGCGACTCCGGGAACCTACAACGTGTCCATAAAGGAATTCACTGCTCAGAACAATAAATGTCCATTTGCAAATGCCCTGGTGAGATTTGAAAGTCCAAATGAAGGAATGAAAATGGCGCAAAAGCTCAATGGCAAACACTGTAAAGGACTGGAAAGATGGTCGGTGACTTTGGACGTCCACCCCTGTCTTGACTTTTACTACACCTGTTTGAAGAACGTCTATGACTTAGTGAAAAACGATGTTTACCAACAATTTGACGAAATTGAAGAAGAATGTCGTCGAGAGTGTGGCGGGGATATCAAGTTGAACGAAACACCCTTTGGAAAACCCAACTCAGGCCGCGTTAAGGTGTCTGTAGAAACTGAGTGTATTGACCACTACATGCAGGCTTCGGCAACAATCACTAGAGCAATTCAAGGAGAGAAATATGACTGTACAAACCCACCACAACGCATGGTACTACTCGGTCCTGCTGGAAGAGACCTTCTTACAAGCATACAAAGAGATACTGGAGGCCTGATATACCCCCCCGATAAACGAACAATGGCCCTGACCATATATGGAACCAGCTTACAGAAAGAAGAAGCCATTGATGCTGTCAACAAGTTTGTCTTTGAGTTGGCATTAAGTGACAGCATGGTTTGGGAGGTGAATCTGAAAGGACCAGACAAACCAAGAGGTCTTTTGAAACAAATCATGTCAATATTTGGTAGTGACCTCGAAGGACTGTGTGCTATCGAAGGAGTGAGCAAAGTTAGCAAATGCATCTTCAAGCATGTTCTAACTATCCATAGTACATCAGATGCAAAAGATGTTGTTCTTCGAAGAATTGAAGAAATAGAGAATTCCCTCTCCACCTTGCCCCAAGTGAGAGATGATACAGCAGATACTAGTGAGGAATGTCCTATTTGTTTGTGTGACGTTACGGTAGAATCAACATACAGACTTACTACCTGTGGTCACGCATACTGTACAGGTTGTGTAATGGAACAGCTAAAGGCAGCGCAGTTTCCCATGGAGTGTGCAAATTGCTCTGAAAAGTTCGCACAGAAGGATATGCAGAACTTACTAGGTCTTGATCATCAAGAACTGTTCAACAATACTATCACAAAGGCAATTGATTCCTATTTAGGCGCCAATCCAGACAAAGCACGACCCTGCCCATCCCCTAATTGCCAAATGGTGTACCTCGTTACTTCTGAAGGAAAGCCATTTCGATGTAGCGTTTGTTCAGCTGCTACATGTACTTCATGTCACCAACCGTATCACCTTGGAATGACATGTAAAGAGTATGACATCGACAAGAAAGACCCTGGTGCAGTAGAGTTCGAAAAATGGATGAGACAAAATCCCGAAGAATGCAAGCGCTGTCCAAATTGTATAAGTCCCATTGAAAGAAATCAAGGCTGTAACCATATGCAGTGCTATAAATGCAAAAAAGATTTTTGTTGGCTGTGCCTGAGAGTATTTACTTCTGAAGATGATTATTACAGACATCAAAGAAACTGTCGTGGAAACGAGGAGATTGGAACAGAGTAA

Transcript

alvinactis_v1_g24264

Protein

alvinactis_v1_g24264

MAELLVDSQTKSAVKKPIIAKKVLFVKNLPYDTKDDEFEKAFSDIGPVRKCFLIREKDSSRKCRGFGYVTFAIEEDAQKAKDTVKTLRGRPLRITFSEKKPRQNRKKESSKDDKHQSVGDDNQDHDDDDDDNNDDLNNTNEDTKEKSPEKRKRKPKSERSQPETDSGRTVLLFGLPATISSKELYKRCRKVGELEKTVFPLEDRNEPVAALTFKTPIIARSATSKLNHKTIKGKEVIAVLKSKEHNKQLKKSKSLKKSRLIIRNLSFKCTEGLLREVFSQCDETPEVHIPMHNKHKRSQGFGFVQFSNVFSAANALKEMNLKQVLGRPMAVDWAVSKGQYELVQNSRESENACSAEAADSGDVHENQGNDKENGEDKSDDDDDSDDGDDGGDESPKKSRITKGREIVMEKVKEDDEEESDDQDGDDDDEEEEEEEEKEEEEAQKSTKKPSDVKEGLTLFVRNVNYDTTEKSLHKCFKKYGDVAYCKIVTDPVTEHSKGTAFVKFKSLESVKKCMDGNADGDAFFLDGYKLQVDIAVTRGKAEQLRQNDKDSKKEPKDKRNLYLAREGVISAGSEAAQDLTKADLLKRQKAEAEKKAKLQNPNCFVSTTRLCARNLPLHLTEAELKKVFSTAAAGSHQTPATVKKVLIIRSKERVDSTGQGRALGFAFIEFTNHKDALAALRSTNNNPKTFGPDRRPIVEFSIENSLALKTREQRLVRSKSKLKQSDEGPGNKTHKEKRQEKAIQRREKRQERKKRKTGMEGNKDINSPNQDGKTDATQKQQKIKITPKKSITEKARPNTKKSFSKNYPKSFGNKNVKKPITQASSETPGNELPVRGVVRSNKRKAKDTKEETEFNIIVQKYKNKLFGETDSIAKRARWTMGDKSSKDKKVVHCTTSRTPTSTTTYDNNLSYGQEVVVPLKHSSHVSVNMNRDSSRAQSYGQEYVRWLEKPLQSSTHDRVRTKYPSAGQSSSQGYDQRMGSQSSSDKSDMLVTTTSPWHDRVKTKDSSVYDVKQSVLEEHAHMKDDDNEIQGQHYCRNENKGELEPEEANDGDDGQKEKTPHKGGCDEEIYEEREELAGDHGHNDRGSDVDNDNDDDDDDDNDDDDNEDEDNDDEDDDNDDEDDDNDDDDDDNDDNEDEDNDDEDDDNDDDEKEMEVGDNEVVAGIEDEEKKKDNIEYHGKKDKNENENRSKLTPRTEQDEKQNSSGKSDKTDALQKDDAPKTTEVLVKITLPTAMDWQIVSDDLKSIMRNIKFKLKERRTASLHRDNFCISFTSRKIAKNAMYLIKTRRKLIKADLCENLIETCLKEILDEKVTALAIHQRKCDEITHKIMALQAGKKKNPKKNKFHSVEEFEKREALKQIAKEVNGQSTEFAKLIEELVQHVDSLKTTQDKDVSADINGIKQRLQREKDRIVGGLPIYAEKSRIIKTIKEHQVCIILGETGSGKSTQIVQYLYDAGFAEKGTIVCTQPRKVAAFSLAKRVSEELKDTKLVDCLDGTRGNRKSSKILFTTDHTLLMKCISDQDLSHFSCVIIDEAHERNINTDLLLGIIKKALPRRPDLRVIVTSATIDPSLFKTYFGGCPVIKVSGKLFPVEIEWKRKQQEDSKLDKSKDYVVEAVNKVVEIHRTGEEGDILVFLTCPAEIDRACSSVLSKTTTNDLVCLPLHGKLQQDDQRKVFDPTPRGKRKVVFSTNCAETSLTIPGIKFVVDSGRAKEMKYDPKRNLNSLEVSIISQSSANQRMGRAGRTDSGKCFRLYTEEDFNDMEKSSKPEILRVHLGQALLKLMELGISDPADFDYVESPPRDSITAAMMELVELEAIKDGNLTELGRRMVRVPVDPRLAKFLFEGFNQGVGYEALILVSVATVNGSVFFRMGTEEEKKEADVKKFEFCHLGGDFMTLLGVVRAWLKVDERDRSRWCCAKSLNAKAMRMANETVKDLKATLKRELKLDNIRWAAFDEETTDKIVQRTLFSCFLTKLCVYTGHERSGYQTVVGGHYVKVHPSSALKFMGGFPKFVIYEKILKTSQDFILNVTPIEEHWLRETMADTSLLRDAQQLVDEMMVQRTIMCSRALIDKTLLPFKEKLPQLESRVSKSCNGAPVAVEVNKQCGIVDVFISQKYAEKGMDIVQSSLEEGRKKLREETLEHAVEGLSSLRVVIQSGLTVQHVLMPGMYRTVIVRDVSHYTQDLYDCMITFGKVIDIGFSKQLAFVTYENPEDAMSAVHSSKSMDFEWSYSIQPKMNRQQHEMANNFNFVVKINWLRRESKDMANASFERCCATVPWYDFPSRWIRNVVIQSKKATVSADKFHPDSVFIRNLHPSSTKLDIKQALLEIFPDTPVEESNIIIQYKPREGVNIAAQSQKSVLERLISKHATPGTYNVSIKEFTAQNNKCPFANALVRFESPNEGMKMAQKLNGKHCKGLERWSVTLDVHPCLDFYYTCLKNVYDLVKNDVYQQFDEIEEECRRECGGDIKLNETPFGKPNSGRVKVSVETECIDHYMQASATITRAIQGEKYDCTNPPQRMVLLGPAGRDLLTSIQRDTGGLIYPPDKRTMALTIYGTSLQKEEAIDAVNKFVFELALSDSMVWEVNLKGPDKPRGLLKQIMSIFGSDLEGLCAIEGVSKVSKCIFKHVLTIHSTSDAKDVVLRRIEEIENSLSTLPQVRDDTADTSEECPICLCDVTVESTYRLTTCGHAYCTGCVMEQLKAAQFPMECANCSEKFAQKDMQNLLGLDHQELFNNTITKAIDSYLGANPDKARPCPSPNCQMVYLVTSEGKPFRCSVCSAATCTSCHQPYHLGMTCKEYDIDKKDPGAVEFEKWMRQNPEECKRCPNCISPIERNQGCNHMQCYKCKKDFCWLCLRVFTSEDDYYRHQRNCRGNEEIGTE*

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CE10	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1
F4KGU4	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1
Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000322 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR051945 all species →	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039 all species →	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12818	DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22	EC:5.6.2.6	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →