Gene detail

Detailed information of alvinactis_v1_g24392 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:3770501...3790582
NR annotation: XP_020894417.1, beta,beta-carotene 15,15'-dioxygenase [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g24392

ATGGACGAACTATTTAGGACCGTACCCGAACAAGCTCTTCCCGTAGAAACGCGTATCACAGGCGAAGTGCCAAAGTGGATCAAAGGCTGTCTGCTGCGCAATGGACCAGCGATGTACGAAATTGGAAAAGACACTGTTAACCATTGGTTTGACGGACTTGGTATGCTCCATAGTTACCACATTGAGGACGGTAAAGTCACCTACACGAGTCGCTACTTACGAAGCCAGGCGTACACGAGAGCTCAGGAGAAAAGAGGGATAGCAATGGCTGAGTTTGGTACACCCGTCCCGCCAGATCCTTGCAAGAACATATTTGCGCGATTTTTTTCTTTCTTTCTTCCTCCCGAAAGAACGGATAATTGTTCTGTGAGCGTGATGAACGTTAAAGGAAAGCTGTACGCTGGCAGTGACTCTCCGTTTATCTTTGAATTCGATCCATATACACTACAGACTAAACATGCGTACAACATGCGCAAAGATTCTGTCGtaccattgcgctTGTTTTCGCTTACACCACATCCGCACAAAGATGACAACGGAACTGTTTTCAACGTGGCCGTATCTCTAAGTAAAGGAACCAAGTATCACTTCCTTGAGACCCCCAGCGAGACTGCAGTCCATCCTGACAAGGAAGTACACCCTCTCAAAGGCACCAAGGTCATCGCCACATTTGAGCCTAAAAATAAGCTCTGCTATTATCACAGCTTTGCAATGACGCCCAAGTATTTCGTCTTCATTGAAAACCCGTTCGTTGTGGATGTGTTTCGTCTACTGACAATGAAGATCAAAGGTCGTTCGTTTCATGAATGTATGAAATGGGACGAGAGCCAACCGTCACGTTTTTATCTCATCGAAAGAGAAACTGGCCGCTGCATTGCGCGCTATACTTCCGAGAGTTTCTTCTCCTTTCATCACGTCAACGCTTACGAAAGCGACGGCGACGTCTTTGTTGATATATGTTGCTACCCAGACGCAAGCATCGTGTACGAGTATTACCTCTCGAATCTTCGTTTCAAATCAGAGCACGATGTCTCCAAAGGTTTTCCTGAGGGAGCGCTGAGGAGATATCGGGTACCAGTTCCAATTGCTGTCAGTAAAAAGCCAACTTTTGTACCTCTATCAACGTACTCGGACGGAAAGGACTACAAGTTGATGACGTATGGACTGGAGCTTCCTGGAATTAATTATGGTTTCGCCAATGGTAAGCCATACCGATATGTCTACGGTCTGAAGCAACGACGTCCAGGAGACTTCTTGAATCAAATTGTGAAGTTCGATGTACTCGCAAAGGATTCCAAAGTCTGGAATTCAAGACATTGTTTCCCCTCGGAACCAGTCTTCGTACCTGCTCTCGGAGGAAGCGACGAAGACGACGGTGTTATCCTGTCAGCGGTTGTTGGTACAAGAGGAAAAAAATCCTTTCTTCTTATCCTGGACGCCAAGACCTTTGATGAGGTGACGCGCGCAATCATTGATTGTCCTGTGACGTACACTCTCCATGGATCTTTGTACAGTAATCTACCGTACAGCATTACACACAATAAAGAAGCATTAGGTCTAAAGTCACTCAACTGCTCTGCCAAACGTTTTGTCGAGTCATTTCTTGACCAAGCAATCCAGCACAATGCTACCAAAGAAAGTATCAATATGACACTGCAACGAAAACCACTCATGCTGGATACTGTCAAAACAACCAAGACAAAAAGGAAGAAAGTCAAAATGTCAGCACACGAGAAAAAAGAACGAGGAATTTATGACTTAACTGCAGGGGATCACAAGTATGAAATGTATTTACCTTTGCACAAACTCTGGACCGACTACATGCAGGACATTTTAAACCTCCACGCAAACAGCAATCTAAAGGAAGTTGTTCCAAAGATGCTCAAGGCAGATTATCATGGATGTCTGATAACAGTTTGCAGATCAAAATGTCCCTCCTACATTGGAGTTACTGGCATTGTTCTACAAGAAACTAAGAATGTCTTCAAGATTATCACAAAGGATGACAAAATTAAAGCCATACCAAAGGGAAACAGTGTCTTCTCTTTTGAAATAAATGGCTTCATGTTCAAGATCTTTGGAAATCATTTCAGGTTTAAAGCTAGTGAGAGATCAGTGAGAAAGTTCAAGACCAAGCCAACACTTGATTTATAA

Transcript

alvinactis_v1_g24392

Protein

Uniprot

Uniprot term	Description
Q9JJS6	Beta,beta-carotene 15,15'-dioxygenase OS=Mus musculus OX=10090 GN=Bco1 PE=1 SV=2
Q91XT5	Beta,beta-carotene 15,15'-dioxygenase OS=Rattus norvegicus OX=10116 GN=Bco1 PE=2 SV=1
Q9HAY6	Beta,beta-carotene 15,15'-dioxygenase OS=Homo sapiens OX=9606 GN=BCO1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01868	RNase_P-MRP_p29	Ribonuclease P/MRP, subunit p29	Family	Interproscan
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002730	Family	Ribonuclease P protein subunit Rpp29/RNP1	Interproscan
IPR036980	Homologous_superfamily	Ribonuclease P/MRP subunit Rpp29 superfamily	Interproscan
IPR023534	Homologous_superfamily	Rof/RNase P-like	Interproscan
IPR004294	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001682	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0030677	Cellular Component	ribonuclease P complex	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121	Biological Process	carotene catabolic process	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10252	BCDO2; beta,beta-carotene 9',10'-dioxygenase	EC:1.13.11.71	Enzymes with EC numbers	-	deepkoala