Gene detail

Detailed information of alvinactis_v1_g24582 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:6326461...6338265
NR annotation: KXJ16452.1, TOX high mobility group box family member 3 [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g24582

ATGCCGGAGAATCACTTCCGGTATGCGACTTTCGGCAGTCGGGATAGCCTGGAACGAGCGAGAAGAAGAACGAAAACACAGGAACGAGGCTATTTAGGATCGCGGGCTCGTTCTAATGAATGCGGTCTTCACTGGGCATGCGCATTTCGCTCTTCAGCTCGACAAAGCTGTGTAATGGCGACGGATCAGGAGTCGAATAATCTCGACGATTTTGATATAGAGCAAGTTATAAATTGGGAAGAACACAATTACGCTTCAAAGAACCTAGAAATCCAGCAACTTCCTGACCTTGATCTATCGACAGACTTGCCTACCAGTGGCTCGTCAGTACTGTCTGGACATGGTACACAGCCAACAGTTAGTCATGGCAGGACGATGTTGATTGGAAACCAGGTGATTGGTTCACACCAACCACCACAGAGGGATCCTATAATACAGACAACCAGCGCAGTAAATCTTAATCCAGTATTTCCCCAAGATGCAAGTTACATGATAAGTGACATTCGGCAAGAACTTGCACATTCATCTACTGCGCGAGTAGCAACAAGAGATGTGCAGCCCTCCTTTCCATCTGAAAACTTTGACCTTCCTTCGATCCGACACCAAAGGCCAATGCCTGTGTCGGGAGCGCAGGTTTTGAATTACATGACAGGTCATGATAGGCATATAGGGTCACAGCACGTGGGGAGTGCCCCTCAGTTAGGTCATTCCTTGAGCAGACTTCCATCGTTGCACAATGGAATGCAAAGTTTTACTCAGCCTTTAACTACCAGTGTACCAGTCAATGAATCTTTGAACCCTTCATTGGATAATGACGAAGGAGGAGATTCCTCAATTGACCAGTTAATAGAAGACATTGTCGACAGGGATATGCCACAAGGAGTTGGTGACCCAGTTGTGTTTTCTACCCACGATGTAGCATTAAGCAATCAACATCAGCAAATGCATCATGTTATGGCTCAAAGTAATCATCATGACAGTACAAGTATAACAGCCAGTACTACAAACCAAATGGCTGCAATGGCACGAAGTTCATCATCAATTGCAACTGGTACTGGGAGTCCTTTGGCTGTTAGTGGCCAGGTAGCAGCTGGCAATGCAATAGCGGCAAATATAGCCCATGCCCATAGTCCATTGCCACAGAATCCATCAAGCCCAATTCCTGTTAAAATACCAAGCCCTCAGATGCAACAATTCAAGGCAGTGGTGCCAATGAGAGGTGCCCGGGGTAACACCAAAAAGCCAGTACCTTTAACAGCTCAGCAGCAACCACATTCCCCACAGAATATGAATATGGGTGTGGCTCACAGCCCAAGACCAGCACCACAAAGAAGCCCACAGCACCCTCCCCAAAGAAGTCCCCAACAGCCTAATAGTGCCCAAAGTCCTCCCTCGTCTGTCAATGCAATTATGTCACAAAATATTTCATCACCTATGTCACAGATGTCTCCACTTTCGTCTGCCGCAGTTCAAAATATGAACTCTCAGGTTATGGGGAGTATGGGAATGCAACACTCCCCTGTAGCGTCACCGTTAAACGTAGCATCACCTCAGAACCAGAGACCTTCCAGACAGGCATCTCCTGGAGGATGTAACATTGGCTCTCCGATTACTCCTGTCGTCCAGCAAGAATTCTCTAAACCTCAAGGCCTTACCCAAACTTACATGACACAAGGAACCCAAGGGAAAGTTTCAGCTCAAAATGTAGGCAACATACAAAATCCTGGTAAATCACGAGCACAGGTAAACATGACAGTGTCGAACACGGCTAATACTACTGGGACTATACTGCATCCAGCTGCCGTCACTAGTGTGCAGAGTAATAGTGGAAATGTTTGGGGACAAAGTCAGTTTGTTTCAACTCAACTAAGACTGCCTAACAATATATCTCAAGGAAATATTTCAACACCTGGTCAGTCGATAACTCCAACACAGCAATCAGTCAGTGTGAATCTGCAGGCAAACACGTCTACAGCCCAGCAAACTAGTGCTAATACAGCTGGCCAGGCTTTGTCAACGTTTGACACAGCAGCAGTCCTCAGGGGACTCACTGCTCTAAAAGGAAGCAACGTTATACCTTTTCAACTAAAACCGGGAACAAACCAACAGCTTCAGGCAATCAAGCTACCACAAAATGCTGCCAATATGGATCTGCTAAAGCAAGCAATGGTGAAGGCTGGCCAAGGAAATGGAGGTCAGGTTGCAGGGAAACCTATGTCTATCAACACATCACAAGGACAAGTTTTTTATTATATTCTTCCCAAAGGTGCCAACATCACTTCTACTCCATGTAGTAATCCAAAAGTTGTCAATACTCATGGACAGCAAGTTAAGATGGTTTTGTTGAATACAAATAATATGTCTAGTGGTAATAGTATTGTTAAGACTGTAAATTCTGCTGGAAACGGAACACCCGTGCCAAGAAGTCAGGTACTTTCACCTAGCATTAGTTCGTCTGGCAATAATCGTGTTGCTACAACCATTGCAAAGGTTTCTCAATCACCATTATCATTCCCTGTGCAACAGAATGTTTCTCTTCGTACCACCATGCATCCCATGGAGGCAATGAGTTCCGTAGTTAAAGCTGTTGGAAATGATAGTACTTCAGTCACACCATCAAGTAGGGCAAATCATATTACCAAGGAAGTCTCTTTTACACACATGCCTAACATTGGCCAGCAACACCCTGACATTCCTGTTGGTTTACAGGCTGTATTAGGTCAAGGACAAGGTGTAATTTCGAAACCATCAAATCCTACAACAGTTCAAAGTGCAGGCACAACACAGATAACTTTTGTTAATGAATCTACTTCAGTTGATCATTTCGTATCGGTACCTGGATTGAGCCAATTAGCAAGTAGTGTAATTACTACTCATCCCGTAACTGCAACAATATCAACCATGGCAACCAAGACAACGCCAGTGTCGTGTACGGGCACACCTGTTGTGATTGGTGATAGCGACGACAGTGATACTCCCTTGGCTGTCGTTGCTGAGACTCTAAGGAAAGCTAACGGagaagaaaagaagaagaagaaaaagaagaaaggggagaagaggaaaaagaaagacaagggTGGAGTTGAGAAACCCTTACCAGCATATCAAATATTCTTCAAGGAGACGCAAACTGCTATCAGACAGCAAAATCCTTCAGTTGATTTTGATAATGTTACAAAGATTGTGAGTCAGATGTGGGAAAACCTACCTGAGGACCAGAAAAAAGTGTACCTTATCAAACAGGAAAAGGCCAAGAAAGACTACGAGAAAGCACTAGAGAAGCAAAAACAGGAACCAAGCCCAAAGATACGAAAATTAGAGACTTCAACTGCTGCGTCTCCTGTCTCTTCCCCTAAAACAACAGCTCCTCCAATAACCTCAACAACCACAACAAGTGCCAAAGAACCTGCCAAACATGAAAGTATTACACTCAAGATACCCAAGGCTATATTGAATAAACCTGATATAGTTGCAAAAATACCAAAAAGTTCTGCAACTGGAGCATCTAGTAAGATTGCAGCCACAGGAAGTAGTTCACTTACTCCAGTTAAAGCTAAGAAGTCCAAGATGTCATTCAACCCAATCAGTCGAAGGATATGCATCAGAGAAGGGTGCAATATGCCTGCAAGGACAACGAAAGAGAGAGGCACTCAGTACTGTAGCAATGACTGTATTGTTGCTCATTGCAG

Transcript

alvinactis_v1_g24582

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5K4	TOX high mobility group box family member 4 OS=Bos taurus OX=9913 GN=TOX4 PE=2 SV=1
Q8BU11	TOX high mobility group box family member 4 OS=Mus musculus OX=10090 GN=Tox4 PE=1 SV=3
Q99PM1	TOX high mobility group box family member 4 OS=Rattus norvegicus OX=10116 GN=Tox4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006109 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051365 all species →	Family	TOX high mobility group box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45781 all species →	AGAP000281-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g24582.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.