Detailed information of alvinactis_v1_g24946 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:11191208...11191921
NR annotation: XP_020897788.1, peroxisomal coenzyme A diphosphatase NUDT7 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0C024Peroxisomal coenzyme A diphosphatase NUDT7 OS=Homo sapiens OX=9606 GN=NUDT7 PE=1 SV=1
Q99P30Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus OX=10090 GN=Nudt7 PE=1 SV=2
Q8GYB1Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NUDT15 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002344 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00293
all species →		NUDIXNUDIX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015797
all species →		Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR045121
all species →		FamilyCoenzyme A pyrophosphataseInterproscan
IPR000086
all species →		DomainNUDIX hydrolase domainInterproscan
IPR000059
all species →		Conserved_siteNUDIX hydrolase, NudL, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12992
all species →		NUDIX HYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0010945
all species →		Molecular Functioncoenzyme A diphosphatase activityInterproscan
GO:0015938
all species →		Biological Processcoenzyme A catabolic processInterproscan
GO:0000287
all species →		Molecular Functionmagnesium ion bindingInterproscan
GO:0009132
all species →		Biological Processnucleoside diphosphate metabolic processInterproscan
GO:0016818
all species →		Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan
GO:0030145
all species →		Molecular Functionmanganese ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for alvinactis_v1_g24946.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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