Gene detail

Detailed information of alvinactis_v1_g25452 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:18282151...18342845
NR annotation: XP_031564852.1, uncharacterized protein LOC116300184 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g25452

ATGGCAACAGATAGTGGTGTAGATATAGATTTATATGCTGAAGTAGGAGATGAGATAGATCATGATATCAGTGGCCAGCATGATGGAGCAGTGGACCTTTATGATGATGTACTAACGACATCTGCTGAACAACAAGCTGAAGATGAAGCTCTTCAAGGCATTGTTAGTTATTCTGGAGATCTGGCAGTACAAACACAAGGTGGATATGAATATAAGTCTTATACCACGGTACATCCAAAGTCTGCTGCATCACAAGCTGCACAAAGTCATTATGAGCGTCAGCGAGGGAAGCCTCTCTATGTTGGTAATTTAACATGGTGGACAACAGACCAAGAACTAACAGAAGCTCTTCAAGAGTGCGGCATTACTGACCTGGTCAATATCAAGTTCTTTGAAAACAGAAATAATGGCCAGTCCAAAGGGTTTGCTTTGATAGAACTTGGCTCAGATAAGTCTGTACAGCTTGTTACAGAACATTTACCAAAAATTGATCTTCATGACCAGAAACTTGTTGTTACTCCAGCAACAAAGCAGTATCTACATGAATTTGAAGCTCAGTCCCGTGCCAAAGCTGGCTCTGGATCAAACTACCAAGGACCACCATTTGGTCCTGATGGACAACAAGGGCCAGGTTACCATGGCATGGGGGGTGACAGAGGTAGAGGCTTCTTTGGCTATAACCGAGGGGGATTTAGAGGGCGTGGTGGTATACGGCCAGGCATGGGGAGAGGTTTTGATGGTGATCGTGGAGACATGGGTCCAAGAGGTCCATGGATGGGTATTCCTGGTCAAATGGGTGGCCCAAGACCACTTCACCATGGGATGCCACCACATTTTGGAGACCAGCAACCACCACCATTTGGCATGAATCCAAACCTGGGCCATTTCCCAAATCAAGGGATGGGTGCAGACAAAGGGCCAGGGCCAATGCCTCCGCAGATGGGCATGCCACCTGGTATGCCTGGGGTAGGAATGACAAATGACCCTTACTTTGCAAGAATGGGTGGGATGTCAAGACCACCTGTTGCTCCTCATGTGAATCCAGCATTCTTCCCCGAAGGACCACCTCCTGACTTTACTGCCATGTCTATGGGCAACAGAGTAGATCCACAGTACCAGGGAAGGCCAGATGAATACAGTGAGAGTATCAAAAGAAACAGTGCTGTTGCAAGTAGCGCAATCAAGAAGGCAATGGCTGATGCTCACTCTGGTGACAATGAGAGTGGAATAGAAACCCTTGTGACAGCAATATcactgataaaacaatcaccatcagccaatgatgaaacatgccagATGTTAGTTCAAAATCTTCAAAGTTGTCTTCAAGGCCTGGAATCTAAAATGCTTGAAAGAAGTCTTAGTCGAACAAGCAAAGATCGTTATGAAGAGAAAGAAGACTACACAGGTAGTGACAGTTCAAGAAGACACCGTCGACgacgatcaagatcacgtgagaaaagatctcggtcacgtgatagacggtcaagatcacgtgacagacACAGTAGGAGTAGTAGAAGtgaacatataaatattaaaacttgccaaaaagagcatagttcagatttgccgagcgcttgtcgatgtcctctcgaaggttttaaatcccataatagctgtaagcatgcagaagatgaatcttatacagaaaagtatcagacgcataaaccatccggattttgctatgggattaagtcttctgatgatttgttcaaaccaaagattgttagatacacggcaacagatgaagatgaagatattggcaagttgtttgtagaatgtttagaaaaagatattagaaaacttgctgagataaaaacaaagcctattttgatgacaaaagagaacaggaaagattatgagaatgcagctgactgtttcatttgtaatcaaaagttgaaagaagataaagttcgcgaccacaatcatttgacgggaaagtatcgcggagctgctcatgctgtttgtaatttaaactatagaattcctaaacacattccagtgatatttcataatttggctggatacgatgctcatttgtttataaaaagtttaggattttcggaaggcaaaattgattgtattccaaataatgaagagaagtacatctcattcaaaaaggaaatagttgtaggtagttgggttaaagatggtcaaacaattctcatcaaacgcgaacttagattcattgatagttttaagtttatgtcatcaggcttggataggctggtggcaaatctgaaaaaagaacagttcagaaacatgtcgaagttcttcacaggaaaaaaactcgatttgctgttgagaaaaggagtttatccttatgattatgtgaatagtttgtcaaagttggatgaaacaactttgccttcaaaagaagagttattttctaaacttaatgacacggatatttcagaagatgattacaaacacgcacagaaagtttggcgtgtttttaaaatggaaactatgagagattatcacgatttgtatcttctttctgatgtaattctactgatggatgcatttgaagcctttagagatgtgtgcatggaaaattacaagctagatccgtgttggtattatacagctccaggtttgtcttgggatgctatgatgaagatgacagagatagaacttgaacttttgaatgatgtggatatgcttctaatgattgaaaaaggaattagaggcggtgttggcatgattacgaagagtgccattctgaagttgtacgaggatcttgggatgaaggtaaaagtacgcagaggaattaccttccaggagtcagactggctgaaaaagtatataaacttgaacacggaacttagaacagcagcaaagaatgactttgaaaaggatttctttaagttgatgaacaacagcgtgtttggtaaaactatggaaaatattcgtaacagacaagatattaaacttgtaacaactgagaaaatggctgcaaggttaatctcacagccgaattatcacaggagaaccatcttttcagaacatctctgtgctattcacatgagaaaaacagaattgatctttaacaagccagtctatttgggaatggttattctagatcagtcgaaagcgctcatgtatgattttcattataactactttaaaaagaagttcaaaagtagtaagttgctgtttacagatacagacagtcttatgtatgagataaaaacagaagatttctataaagatattaaaggtgatattgatgagagatttgatacaagcgcttatccaaaagatcatgcaattggcaagtgggtcaataagaaagtaataggaatgatgaaagatgaaactgctgcagccggcgaaataactgagttcgttggtttgagaagtaaactgtacgcttacaaaatagatgaaaaagaggaaaagaaatgcaaaggtattaagaagtctgttgtaaagaatgatattgaatttgatgattataagaattgtctgttctctggagagaaagtcatgcgaaagatgaatgtgattagaagttacaagcaccaactcttttcagaaacagtaaataaagtagctttgagtagagaagatgataaaaggattattctttcagatcaaattcacacccactctatctga

Transcript

alvinactis_v1_g25452

Protein

Uniprot

Uniprot term	Description
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q6NVF9	Cleavage and polyadenylation specificity factor subunit 6 OS=Mus musculus OX=10090 GN=Cpsf6 PE=1 SV=1
Q0P5D2	Cleavage and polyadenylation specificity factor subunit 6 OS=Bos taurus OX=9913 GN=CPSF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan