Gene detail

Detailed information of alvinactis_v1_g25538 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:19484997...19490937
NR annotation: CAB3996201.1, zinc finger [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g25538

ATGGACGAACTTGTCAAGCTCGGAGGTGTGCTGGGACTCGAAGGAAACGACCTGAAAGAATTCATCGAACAAAAGATGGCTGAGGAGCGAGAAGAAAGAACGAAGTCGGAagataacaaccaacttaatggcgtgattttcctgaaccttaaaaaagcttttgatactatgaatcatcctattctgctacaaaagctcatatcatatggggttacctctacaaccctagattggttcaattcctatcttgatgaacgtaaacagaaaactataattgatggagttatAGAGAACCAGGCGAGAGAAGAGAGAGCTCAAGATCGAGAGCTACGAAAATTGGAGCTCGCACACGAGTTGGAGATTAGGAAGCTGGAAGCCCAAGCCTCGAAAGAAAGCCCACCAGAAAACCACGTGTCTTCGGCAAAAACTCCCAAACTCCCTGCGTTTGTGGACGGAATGTACGACATTGACAGCTACTTGAGACGATTTGAAAGGTTCGCAACTACGACCAAGTGGAACAAGTCAGCCTGGGCTTCGAATCTCAGCGCTCTTCTCACCGGAGAGAGCCTTGAACAGTTCATTGTAAAACTCAAGAACAACTTGGAACGCTGGGTTGAGTTATCTAGTATATCTCAAACTTATGCTAATCTCATTGATTTGTTTGTCAAGGAGCAATTTATTAATTCATGTCCCCAAGATTTGAAGGTACACATTCAAGAGAGGGCCCCAAAAGACCTCGCGGAGTTATCGGAGATAGCTGATAAGTTCTTACAAGCCCATAATCGTGAATTGGCAACGCCTTCTTCTGCTCGCGTTGGGAGGAGAGAAGAACCCATGAATGCATCCCAGACAACAGAGAAACCCATTCAATGCTACAGATGTCAGGAGTTTGGACACAAGTCTTCGGCTTGTGTGAAGAAACCTCAGCTTGGCCAGGTTCGCCAGTGCTATAAGTGTAGTGGTTTTGGTCACGAAGCTAAAGTGTGCCCGTCAATTAGAAGACCGACGCAAAGGTTCGGTAGAGGTAATAGTGGTAATCAGGAGGTGAGTGGACTGAGCGAGTGGAAGGAAAAAGGAAAGAATATGCCAGTCGAGAATGGGAAAATTGGAGAAACAATTGTTAATACATTACGTGACACTGGATGTAGTGGTGTCGTAGTTAAAAGAGAGTTTGTCAAGGATGAACAGTTAACTGGAAAGCTTGGCTACATGATGTTAATAGATAACACAGTGAGAGAGGTACCTGTAGCATTAATAACTGTGGACACTCCTTATTTTAAAGGAGAAGTGGAGGCGCAATGTCTCCCCGATTCAATTTACGATTTAATTATTGGAAACATTCCAGGAGCAAGGAACCCTGAGAAACCTGATCCAGACTGGTGCGAGGGTGCAGCGGTGACCACACGAGCTCAAGCTAAGAGGAGTGATGTCTTGGCCCCTCTACGTGTTACAGAGAACCACTGGAAAGCAGTAGACAAAGAACAACTGGAAGTACTGCAACGCCAGGATAAGTCattggacaagctgcgagagatgaacgacgtcaaagctaaaggcccaattgacccatcatcagaggcaggccatcgttacatacttactttagtcgattatgctactagatatcctgatgccgtaccactcaagaaaatcaccacagaaagagttgccgaagccttaatgagtatgttcagccgtcttggcatccccgaagaagtcctatgtgataggggaagccagtttatttctgattgtatgaaggaggtggcacgacttctgaaccatttaaccactactccatatcatccaatgtgcaacgggctggtggaaaagttcaacggcacactgaaggccatgttgagaagattatccagtgaacaaccaagacaatggcataggtatgttgatgctctattatttgcatatcgtgaggttccccaagagtcgacgggatttcccccttttgagcttctttatgggaggacagtgaaagagtccatgcatatcctaagggagttgtggaccaaggatgttactaagcctgatactaagaactgttatcagtacgtttttgagcttagggacaggatggaacagaccctgtag

Transcript

alvinactis_v1_g25538

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan