Gene detail

Detailed information of alvinactis_v1_g25550 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:19671532...19677868
NR annotation: XP_032229946.2, uncharacterized protein LOC5505744 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g25550

atgaacgttccacacgcaagccacatgggcggcgtgtgggaacgccaaatcagatccgtacgaaacgtattgaatgtattgctcgaacgtcaaggcacgcagctggacgacgagtcactgagaacgctaatgattgaagcggaagcaattgtcaacagccgcccgctgaccacagagagcgcgaactccgcagagtcaacatcgccactctcgcccaatcatctacttacaatgaaaagcaaggttgttcttccacctcctgggatcttccagcatccagatctgtactctagaaaacgctggcgccgtgtacagtacttggccaatgaattctggatcaagtggaggaagaccttccttcagtcactgcaacaaagaccgcaatggacttcgacaaagagaaacatccaagttgatgatgttgtgatcgtgaaagaagaaggactgccaagaaacaagtggctactggcccgcgttacagaaacctaccccaacgacgatggaaaagtacgcaagAATTTACAGGAGAAACGAGAAGCTATAAGACAACATATTATTCAATGGGGCCAAGAAAAAAACAGAAGAATTTCTGATGGCTATGATTTTGAAAAAGAACACAAGAGAGCAAAGTGGGCCAAACAATATCCATCACCATATAACAGTACTAGCACAGGCAGTGACCATGACACTGACACAGATGAAGATGTAGGATCATCAAATAATGTGAAAGACTTGACTATTTATAGTGCAAAGATTGCTGTACTGGTTGCATTTAAAGCGTCGTCCATGTCTGACTTAAGTTTGAAACAACACCTTATCCCTTTAGCCAAAGAGTTGAAAGTTAAGTATAGATCTAGGGGTAAATATGAGATGCTGTTACCTTTGGCACATACTCTTTTTAAGAATAGTTATTTGGTGCCTGCTGGAGATGATATTACATGTAATTATTTACAACTTGATAGAAACCACATAAAACTTGTTAAGAagttaggccaatcattatcatctccaacctcaagtgcaatccctgagttaggccattcatcatcatctccaacctcaagtgcaatccctgatactgatgaaggtgatgaagatgaggatgatgaagaCAAAAgtaaagcaaagatattatgctggaaaactttcattaacgctgatcaagacagcatcactgcactcgcagacctgggaaccactgttcagccgaatggaagtacctatgctgggatcgaaaagctagtttgcaagctgtaccagccaaatacccacatcaccaaggtaaaggaactgagatggcttctgtttcgcaagaagcaagctgaatcggagagactgccgcccaccctagcagcactgaaggaagctatcaagagagcacatcaccagtgcatggtatggaacaacgacatcgtgccaaatccagaactgccatcgccatcgaattacggatggaaattggaaacagatgaatggtttccaataatgacaccattacagccagcgccagatgccgtgctccatctagtcaagtgtggttgttcaagggagaggtgctcaacgaaccgatgccaatgtcgcaaggctggactcccatgcactgatctctgtagttgtatggacaatgaagaAGACGAGCCCTGCAATAATGCCATTGAGGAGGAAGAGGAGATGGGCAGCGAGTCCAGtgacaatgaggaggaagtggatgatgacgatgaagatgacTTgtggcttgttatcttcaagaaattcccacgggactttaaatcgcgacatatgctccctgactacaagacaacaaccagcacaacagccaatacatcagccaagacaacaaccagcacaacagccaatacagcagccagcacaacagcAAGTAATACAACCACAACAAAGGTTGGCACGTCAGGCTACCCAACAAGTACCATTCAAATGGGAAAGccatttgaactaatttctactgaaaccaatagatatgcatcacaatttttggaaaacaatcaacagcttccacagtactcaagatttcaaaaatggaaagaaaccaatgttgctgaagtgaaagcatacatagcactgcagattgcaatgggtctttgtcaaaagaatgaaatagaggactactggggtaccttctggctgactcacttgtctttttcagatgttatgtcccgaaatagatatcagttactgacatctttcattcactttgctaacaatgatcaagtaaacagacccacaagagggcaacctggctatgatcagttatggaaagttataccactgatggatatttgtgatcttatataccaaactgtttatggtccagtcacagaaagtatatgcttatctcttctagaaggctatgaagactgtgggtttagagtgttcacagacaacttttatacctcccctgcactttataaggaactacaacaaaaagggattggtgcatgtggaacagttaaaccatgtcggaaaaatatgccagctgatattcatcccaaacaactccatttagacagaggggacgatcccatatttatgcgctgtaatgatatggtggcatgtgcatggcatgacaccaacagagtgcactttatatctacactacatacaaacaacaccttagacaaaagaattaggtcaagaggtgcagatagtggatatagagaagttgaaaaaccagtcattggtgagacatataatcagcatacatgggtggtgtggatattttag

Transcript

alvinactis_v1_g25550

Protein

Uniprot

Uniprot term	Description
Q6P3X8	PiggyBac transposable element-derived protein 2 OS=Homo sapiens OX=9606 GN=PGBD2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR033467	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan