Genomic Location: chr_1:42402125...42414654
NR annotation: CAH3164127.1, unnamed protein product, partial [Porites lobata]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g2589 |
| Transcript |
| alvinactis_v1_g2589 |
| Protein |
| alvinactis_v1_g2589 |
| UniProt accession | Description |
|---|---|
| Q54VG4 | Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum OX=44689 GN=sgt PE=1 SV=1 |
| Q96EQ0 | Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens OX=9606 GN=SGTB PE=1 SV=1 |
| Q4WTC0 | Heat-shock protein cognate (HSC) co-chaperone sgt12 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=sgt12 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006613 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13414 all species → | TPR_11 | TPR repeat | Repeat | Interproscan |
| PF00515 all species → | TPR_1 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF16546 all species → | SGTA_dimer | Homodimerisation domain of SGTA | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR032374 all species → | Domain | SGTA, homodimerisation domain | Interproscan |
| IPR047150 all species → | Family | SGT | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45831 all species → | LD24721P | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006620 all species → | Biological Process | post-translational protein targeting to endoplasmic reticulum membrane | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0060090 all species → | Molecular Function | molecular adaptor activity | Interproscan |
| GO:0072380 all species → | Cellular Component | TRC complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16365 | SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
