Gene detail

Detailed information of alvinactis_v1_g26169 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_14:1822904...1867883
NR annotation: XP_020907267.1, protein RRP5 homolog [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g26169

ATGGCGACCAAGAGGTCTCTTGAAGACAAACAACATTCAAAGAGTAAAAAGAGACAGAAAACTACTAAAGAATCTAACGAATCAAGTGCAGTAGAACAAGAAGTAGACTTCCCTAGAGGGGGTGCTTGTGCATTGAGTCCTTTAGAAGTACGCAGAATAAAGCAAAAAGCTGAGAAAGATGTTCTTTTTGGGGTTCCAGTTaaagaagaaactaaaaagacaaagaagaaatcaaaagcaaagactaaaacaaaTCCTGATGAAGAGAAGTCTTTCATTGATTATGAATCGACCACTCACCTTAAGCATGTTGAAAACCTTTCATTTAAGAGACTTTCTGCTGGCATGAAATTACTTGGTGTAGTAAAGGAAATCACTGACTTTGAAGTAATCATTAGTTTACCTAATGGACTGAGTGGATTTGTAAATAGTTTATATATAAACAACAAGATGACAGCCATGTTGACCTCCAAGGATGACAAACCGAACAGTGAAGACGATGAGGAGGAGGATGATATTCCTTCGTTGGAAGACCTTTTTACAGTCAATAGTTTTGTGGTATGTGTAATCGTGGACATTAATCCAGACAAGCATGGCCACAAGAAAATCAAGCTGTCAGTCAAACCAGAAGACATAAATAGTGGTGTTACTAGTGTCGTTAAAGGAATGGTACTCCATGGCTATGTATTTAGTGAAGAAGACCATGGTTTTATAGTTTCATTTGGAATTCAAGGAAAAACTGGTTTTCTTCCTAAAAAGCCAACACCACcagTGAGTATAAAGGTTGGACAGCCTATTCAGGTGTATGTCAAGTCAGGAGATGAAGGCCGTGTTGTTGCTGTTAGAGTGAACCAAGAGCAAATCAATACTGCAATGGTTACAGAGCAAATGAATGTAAAACTGTCAAGCCTTATCCCAGGAATGCTTGTTAAAATGACAGTCAAAGATTATACTCCCAATGGACTCCTTGTCTCTTTTCTTGACATGTTTGAGGGAAGCGTGAACTTGAATCATTTATCTGACAATGGATGTGATGGTCAAAACCTAGAGAAGAAGTACAAGAAGAAGACAAAGGTTATAGGTCGTATATTGTATATCAACCACAAGAATAAGCTTATAGCTTTAAGTGCTCATCCCAGTATTGTCCAGTACACACCTTACTCATTCCAAGGCTTAACCTTTGGTGACATCATAGATGAGGCAACAGTTATTAGAGTAGATGAAGGCTTTGGTATGGTGATTAAACTAAGTGACGACATCCAGGGATATGCTCATATTTCTCATGTTTCTGATTCACATTTGGAAAAACTTGGTAAAAAGTACAAAGCAGGAACACGGCATAGGTGTAGAATTATTGGTTTTAATGCAGTTGATGGCTTGGTTTCTTTGACTTTAAAAAAGTCAGTCATTGAGAGACCTTTCCTTCGCTACAATGATATTACAGTAGGATCAATCATTGAGTGTACAATATTGAGCCTGGAGAAGTTTGGCATGCTAGTATCAGTATCTAACAACATTAAGGGTTTAGTCACTAATATGCATCTTGCCGACATCATCCTTAAACACCCAGAAAAGAAGTTAACAGAAGGGAaacagatcaagtgcaggGTCCTTGAAGTTGACCCAGAAAAACATCGTCTACACTTCACTTATAAAAGGACCCTTGTCTCATCTGAACTGCCGTTACTTACCAAGTATACTGACGCTAAGCGAGGCATGGCAACACATGGTTTTATCACCTCTATACGTGAACATGGATGCATTGTGACATTCTATAACAATGTCAAAGGATTCATTGCCAAAAGTGAACTTGGCATTCAACCCCAGGAAGACCCACGTAAAGTATTCTACGTAGGTCAAGTATTGACCTGCCATGTCTTGAATGCTCAACCAGAACAACAAAAGATGAAATTGAGTCTAAAGGCCAGATCGGCAGTCGGCTCAGACATATCAGAACCAGTTAACACAAAAACTGGAACGATTGTTGTTGTTGATGTCATTGCTAGTAGTAATGAAGGCCTTGATGTACTAGTCCAACCAAGTGGTTTTCCTGCTTTGCTACCATTTGCTCATTTATCAGATCACACTAACCACTGTCAGGCTTTACTCTCTGTGTACAAGCCAGCAGATAAACCATTGAGATTAACTGATGTGTTATACTATGGACGTGAGAATCAAAGAACACATATTGTATCTCTAAAATCTTCACTAAAAGCAGCTGCATTACATGACAAACTGTTAAGTAATTTTGATGACCTCAAAGTTGGCACGATTCTTGCTGGATACGTCAAGCGGATTATGGGATATGGCATCTTTATAGAATTTGCACCCAGAATCTTTGGTCTTGCACCTAATTCTTTTTTAGCCAACCAGTTTGTATCCGATGCCTCAGAGCATTTCCAAGTTGGACAATCAGTCATGGCCAAGGTTGTTGAAATAGATGCTGAGCGTAAGCGATTCCTCGTTAGCCTGAAACAGTCAGATCTAATGCCTGATTCTATCGGCTGGGATAAAAGTATAACAGGAGAGTTATTGCAAGACTTTCTGATGGAACGACAGTTAATTCTGGATGACAATGCTGCTAAATTAGATGATGTGAAAAAAATCATGTCGCTAGCAACAGGAAGCCTTATAGAAGCTAAAGTGAAGTCAATCAAGAAACATGGCATTTTTCTTCAACTTGCTGATGGTGTTCAAGGCTTTGTATCTCATCAATTAGCAGAAGGGGTGAGTTGTCAAGAGGATGAAGTTGTCTATGGTGTTATCTTGGACCACAACATGGAGTCAAAGACAGTGGATGTCACACTATGGCCACAAATAGTCCAAGAAAGAAGACATGTAGAGGGTGAAAAGACAAAGAACAAAAAGATAAAGCCTCAGCAAATGGTTGAATGCATTGTACTGCTTGTCAAGCAAAGTTACATGATTGTCTGTTTACCACAGCACCATTACAAGTTAGCCATTGCTCCTATGAAAATGCATTTGAATGATATCAGAGATGCTTCCAAAAGATTTGCTGTTGGACAGAAGTATACAGCTACTGTTTATAGTTCACAGCCATGTATCGCTGTTTTGCAAGAGaaaacaatcgataaagaaaacatgaagactggtgttgtgacttctgctgtTGTGAAGTCTATCAAAGCCTTACAGATGAATGTACAGCTTGACGGTTGTGGTGTGAATGGAAGAGTTTATATCTGTCATGCTACAGATGACATCAAGGAGGGACAGTCACCCTTTAAATCCTATCGACAAGGAGAAAAGATTCAAGTTAAAGTGTTAGGCTTTAGGGACACCAAGACACATAAATTTCTTCCAGTGACTCACAAGAATTTTACCAGAGCAGTTGCAGAACTCTCCATAAAACAAAGtgatgttgctagCGCTACAGAGTATAAAGCACCAAAACTAGACGATTACAAAGTAGGAGATCAAATAACAGCATTTGTTAAAACAGCAACAGATCATTGCATATGGATGATTGTGTCTGCCAATGTGACTGGGCGTGTGTCTCTACTTGATGCTTCTTCAAATGTCAAGGTTCTAAGAAAACTATCATCTCACTTCAAGcatggaactggacatacatgctacgtcatggctgtagataacacccatgacacactagaactatcaattacctATAAACCAGGGGTGACTCTGTCCAAGGGCATGTTAGTACCAGGCCGTGTAAGCAAGATCAACCCAGTCTCTGGTTTATTTATTCAACTACCACTGCATAAATGTGGCATGGCTTCGTTGACAGACGTCCAGGACCAGTATTCAGCTTCACCTGTGGAAGGCTTCAACAACAGACAAATAGTCACGTGTTACATCTTAGGAGTAAAAGATGATGAACACTTTGATTTATCACTCAGACCCTCCAGGACTGAAGGAGAAAGTACACAAGACGAAGCAGTTGAGGAGAGTAAACCCACAGATCCTGAATACAAGACGTTAACAGACCTTGATGTTGGAGACATAGTTAAAGGTTTTGTCAAGTCTGCCAGCAATGCTGGGGTGTTTGTAAGTTTGGCTCATCACATTGTCGCTCGTGTGCAAATCAAGAACCTGTCACATTTCTTTGTCAAAGAATGGAAGCCACTCTTTCTTCCTGGAAAACTTGTCATAGGAAAAATCCTCAGTATAAACCCTGCAGATGGTCGTATAGAGTTAACTCTAAAGGGCAAGGATACTGGTCTAGAGGACCCTGCCCCAAATCCTAAGAAAACAGAAAAAGAAAAAGCGAAGAAAAGAAAGAAAGAAGCGGCTTCTAAACAAGTGAAAACTGTTGATGCAGATGATGATGAGAATGTTGACAGCGATGAAGAAGTAATGCTTAAGAAATTGAAATCAGACGAATCAGACAGTGAAGATGAAAATGAAGAAAAGGCAACAGAAAGTGAGGAATCAGATGAAGAGGAATCGTCAGACGAGAACATGGATACTGTCTCGACGTCCCGTACGCTCCCAAGGTTACAGATGTCGTGCGGATTTGACTGGAATGCTACTGCATACGAGAATGGTCATAACAAGGATAGCGATGAAGAGAGCAGTGAGAGTGAAACAGAGATTACTGAACAGGTTTCTCGCAAGAAAAGTAAGCGTCAGAAAAGAGCTGAAAAGAAGGCAGAAGAAGATTTTCTGTACAAAACCGAACAAGCTCTACTTGATCAAGACCGTGCCCCAGAATCCACAGACGATTTTGATCGTTTAGTTCTAACCTCACCTAATAACTCTGTACTATGGCTACAATACATGGCCTTCCACCTTCACATGACAGAGGTCGACAAAGCCAGGGCAGTCGCTGAAAGAGCTGTGAAAACTATTTCATTCAGGGAGGAACGTGAGAAGCTAAATATCTGGGTTGCCATGATGAACCTAGAGAATCTCTACGGTACGCAGGAATCTCTTATCAAGGTGTTTGAAAGAGCCTTACAACACAACGACCCCAAGAAAGTCTTCTTCCACTTGATAACTATTTATTCAAAGTCAGAAAAGAATGAGCTGGCAGAGCAACTGTTTCACACGATGACAAAAAGGTTTAGTCAAAGCAAGAAAGTTTGGATTGAGTTTGGAAGATTTGACATGAAATGCGGGAAGCTAGAATCAGCGAGAAAAATGCTGCAACGAGCACTGAAAAGTTTACCAGGACGAAAACACGTAGATACGATTGTTCAGTTTGCTATCATGGAATTCAAGCTTGGAGATCCTCAACGTGGACAGACAGTCATTGAGGAAGTCCTAAGCAACTACCCCAAACGATCAGACCTTTGGTCGGTGTACATTGATATGATGATAAAACAAGGAGACCTGGAAATTGTCAGGAACATCTTTGAACGAGTGATTCATCTCAATTTGTCCTCGAGGAAGATGAAGTTCTTGTTTAAACGCTACTTGTCGTTTGAGCGTGAACATGGAGATGAGTTGAGTGTAGAGAAAGTCAAGACGAAAGCAATGGAGTACGTCGAGTCCAAGGTTGCGCTCACCAATCTGGCTGTTCTACTACAAGTTATTTTACAAGTTTTCGACGTCGATCGCCTCACAACTGTCAAGACAAAGGATGATCATTGGAGAGAACTTATATTTAGTCCTTTAAAAAAAGAGCAGATTGCTACAAGTGGAACCAACTGGGAATGTCTAATACCGGCTAAAAGGATACCTCTGCCCTGGTTAAAGGAACAAGAAAAAAAGAACAGGTTTATGCATAAGCGATTGGAATACACTCCACTTCCATTGGAAGTGGAGAATGTTTCAAGCAACTCGCTGACAGTTTTTCCATTGTTGGATTTCGACGATTTGAACTGTCAAGGCAGTCCGTTCGACGATGATCCTCTTTCAGACGGCTCACAATATCAGCCATGTTCCGAGTCGTGGGACGATTTTCAGTCACTTTCACCTTTTGGTGCCGACTGGGAAATGGAACAGGAATTCTTCAAGTCTGATTTTAACGACTTTGAATGTAAAACACAAGGCCCAACTCTTGCTGAACTCAACAATCAGAGATCAACATCACCATTGATCAATCCAGAAATGGAACGACTTCACCGTATTGCAACTCGCACGGACGTCGACGATCTCCGTTCTACAGGATCGTATTCCGATATCAAAATTCGCGTGGAAAGTCCAGAAATGCTGGATAAAAACAAGGAAAATGTGTTTTCGTCTTCTACAAGGAGTGACAGCACGAATCGTTACGATGAGGAAAGTTATCAGAAGCGATTAAACGATGAGGAAAGTTTACCTTCAAAGCGGGGACATGAGTCTTTCCTCGATCGCAATGTTACGTCTACTTGTACGGTTAAACAGGAACCCAGAGAAACTATTGAACTCAAACATTCTGATCTTATGAAAAGGATTGCTTATCTTGAAGCTAAATCGAACAACCAGACATTACCTGAAGAGTCTCCAAGTACTGTGGGGAAGTACTCGGAATCAGAATCGAGAGATGATGACAACAGAACTGTAGGTGAGAGTACGAGTGAGGATGAGCAGCTTGCTGTTATTCAGGAAGAATCTGCCGATGAAGATCTGGACAGTGAGGATGATTTTGAAGACAGTCATTCGAAAGACTTCGAAATCCCAGCAAAACAGCGAAAGGGTAGAAGGGGTGATATGGAAGACATGAACCCCAACCCTAGAAAGTTGCTTGAAATAAGTCGGGAGCTCAACCGATTGACTAAAATCATTACAGATCTCAAGCCTATCCACAGTCTTCCTATGACTGCAAGGAATAAGTCCAAAAAGGAGAAAAACAAGCTAGCTTCGAGAGCTTGCAGATTGAAGAAGAAAGCTCAACATGAATCAAACAAGCTCAAGATTCATGGTCTGGAGTTAGAACACAAACGTTTAATCTCTCTGATTGAAGAAGTCAAAGCTGAGATGATACGAGATACCCAGGGCTATACAGTTAGTGGAGAACTGAGTAACAAAGTGGAGAATTTGATCCATAACAGTGTTGGTAATCAAATTGTTGCTGGTCACACTACTGCCTTTGTTGAATCCATTCTCAAGGCAACAGCAAATTCAACGCCAGGGTTCAAAGGAATGGATATTTTACTGAACATCTGA

Transcript

alvinactis_v1_g26169

Protein

alvinactis_v1_g26169

MATKRSLEDKQHSKSKKRQKTTKESNESSAVEQEVDFPRGGACALSPLEVRRIKQKAEKDVLFGVPVKEETKKTKKKSKAKTKTNPDEEKSFIDYESTTHLKHVENLSFKRLSAGMKLLGVVKEITDFEVIISLPNGLSGFVNSLYINNKMTAMLTSKDDKPNSEDDEEEDDIPSLEDLFTVNSFVVCVIVDINPDKHGHKKIKLSVKPEDINSGVTSVVKGMVLHGYVFSEEDHGFIVSFGIQGKTGFLPKKPTPPVSIKVGQPIQVYVKSGDEGRVVAVRVNQEQINTAMVTEQMNVKLSSLIPGMLVKMTVKDYTPNGLLVSFLDMFEGSVNLNHLSDNGCDGQNLEKKYKKKTKVIGRILYINHKNKLIALSAHPSIVQYTPYSFQGLTFGDIIDEATVIRVDEGFGMVIKLSDDIQGYAHISHVSDSHLEKLGKKYKAGTRHRCRIIGFNAVDGLVSLTLKKSVIERPFLRYNDITVGSIIECTILSLEKFGMLVSVSNNIKGLVTNMHLADIILKHPEKKLTEGKQIKCRVLEVDPEKHRLHFTYKRTLVSSELPLLTKYTDAKRGMATHGFITSIREHGCIVTFYNNVKGFIAKSELGIQPQEDPRKVFYVGQVLTCHVLNAQPEQQKMKLSLKARSAVGSDISEPVNTKTGTIVVVDVIASSNEGLDVLVQPSGFPALLPFAHLSDHTNHCQALLSVYKPADKPLRLTDVLYYGRENQRTHIVSLKSSLKAAALHDKLLSNFDDLKVGTILAGYVKRIMGYGIFIEFAPRIFGLAPNSFLANQFVSDASEHFQVGQSVMAKVVEIDAERKRFLVSLKQSDLMPDSIGWDKSITGELLQDFLMERQLILDDNAAKLDDVKKIMSLATGSLIEAKVKSIKKHGIFLQLADGVQGFVSHQLAEGVSCQEDEVVYGVILDHNMESKTVDVTLWPQIVQERRHVEGEKTKNKKIKPQQMVECIVLLVKQSYMIVCLPQHHYKLAIAPMKMHLNDIRDASKRFAVGQKYTATVYSSQPCIAVLQEKTIDKENMKTGVVTSAVVKSIKALQMNVQLDGCGVNGRVYICHATDDIKEGQSPFKSYRQGEKIQVKVLGFRDTKTHKFLPVTHKNFTRAVAELSIKQSDVASATEYKAPKLDDYKVGDQITAFVKTATDHCIWMIVSANVTGRVSLLDASSNVKVLRKLSSHFKHGTGHTCYVMAVDNTHDTLELSITYKPGVTLSKGMLVPGRVSKINPVSGLFIQLPLHKCGMASLTDVQDQYSASPVEGFNNRQIVTCYILGVKDDEHFDLSLRPSRTEGESTQDEAVEESKPTDPEYKTLTDLDVGDIVKGFVKSASNAGVFVSLAHHIVARVQIKNLSHFFVKEWKPLFLPGKLVIGKILSINPADGRIELTLKGKDTGLEDPAPNPKKTEKEKAKKRKKEAASKQVKTVDADDDENVDSDEEVMLKKLKSDESDSEDENEEKATESEESDEEESSDENMDTVSTSRTLPRLQMSCGFDWNATAYENGHNKDSDEESSESETEITEQVSRKKSKRQKRAEKKAEEDFLYKTEQALLDQDRAPESTDDFDRLVLTSPNNSVLWLQYMAFHLHMTEVDKARAVAERAVKTISFREEREKLNIWVAMMNLENLYGTQESLIKVFERALQHNDPKKVFFHLITIYSKSEKNELAEQLFHTMTKRFSQSKKVWIEFGRFDMKCGKLESARKMLQRALKSLPGRKHVDTIVQFAIMEFKLGDPQRGQTVIEEVLSNYPKRSDLWSVYIDMMIKQGDLEIVRNIFERVIHLNLSSRKMKFLFKRYLSFEREHGDELSVEKVKTKAMEYVESKVALTNLAVLLQVILQVFDVDRLTTVKTKDDHWRELIFSPLKKEQIATSGTNWECLIPAKRIPLPWLKEQEKKNRFMHKRLEYTPLPLEVENVSSNSLTVFPLLDFDDLNCQGSPFDDDPLSDGSQYQPCSESWDDFQSLSPFGADWEMEQEFFKSDFNDFECKTQGPTLAELNNQRSTSPLINPEMERLHRIATRTDVDDLRSTGSYSDIKIRVESPEMLDKNKENVFSSSTRSDSTNRYDEESYQKRLNDEESLPSKRGHESFLDRNVTSTCTVKQEPRETIELKHSDLMKRIAYLEAKSNNQTLPEESPSTVGKYSESESRDDDNRTVGESTSEDEQLAVIQEESADEDLDSEDDFEDSHSKDFEIPAKQRKGRRGDMEDMNPNPRKLLEISRELNRLTKIITDLKPIHSLPMTARNKSKKEKNKLASRACRLKKKAQHESNKLKIHGLELEHKRLISLIEEVKAEMIRDTQGYTVSGELSNKVENLIHNSVGNQIVAGHTTAFVESILKATANSTPGFKGMDILLNI*

Uniprot

Uniprot term	Description
Q6NS46	Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2
Q14690	Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3
A7MB10	Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF05843	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045209	Family	rRNA biogenesis protein Rrp5	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR004827	Domain	Basic-leucine zipper domain	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR048059	Domain	rRNA biogenesis protein RRP5, S1 domain, first repeat	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR048058	Domain	rRNA biogenesis protein RRP5, S1 domain, eleventh repeat	Interproscan
IPR008847	Domain	Suppressor of forked	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23270	PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14792	RRP5, PDCD11; rRNA biogenesis protein RRP5	-	Ribosome biogenesis	ko03009	deepkoala