Gene detail

Detailed information of alvinactis_v1_g2703 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:45491415...45506094
NR annotation: XP_020898714.1, uncharacterized protein LOC110237464 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g2703

ATGAATAGCGAGGAAGAGCTTCCGAATTTTAATTTTGATAAAATATTTGAAGAAAGCGAAGAGCCAGTTGCTAAACGGAAAAAAGATGAGAGGTTTGCGAGTCTCGACGAAGGAGATCTTGATGAGCTCGTAGATGGCGCTGTGGCAAAATCTACGAAGTACGCCACCAAATACGCAGTTTCAGTGTTTAAAGAGTGGGCTTCAGCAAAAAGAATAACAAAAGATATCCACGAGCAAACTAAGGGCGAACTAGACATGAGCTTGCGGCAGttttacgccgagaccaggaacaaagagggaaacaattacagcaagagtacacttttgggatttagaaatggcctagagcgctacctgaacaaccctccccataacaaaggaatccatattgctacagatccccagttccagcagtcaaatcagatgttaaacgccaaactgaaaaccatgaaacaacaaggtgaacaaaacacaaagcacaaacctgccattgagcgtgaagaccttcgcagactaaaggagagtgatgccatgagccctttaacaccacaagggctcctaaacaacgtatggtttcatgtaaccttctacttctgtagacgagggcgggaaggccaaagaaacttaacgaagtcaagcttcgagtttctggaagacgagaaccgaaagccctacgctactatggcccacgatgaagccagtaaaaatcaccctggcggaatcaccgacactccaagcttcgagaaactcggtcgcgtctatcagacagatcatcccaacgatggatacaaagcccttcgcctttacctggagaaactgaacccaaactgtagtgctttttttcaatttccaaagcgctattggcCAGGACCAACAGAGCCAGTGTGGTACGAGAACAGatgcctcggtgtcaataaactgggagggatgatgaaggagttgagtattgcagccaatctgtcgaaggtctacacaaaccactgtgtcagggccacggctatcaccttatggtctgatgcaggtctatccaatcgccatattatggcaatctctggccacagaaacgagaattcggcactcagatcctacaacgcacgtccctcgtcaacccagcttcagttgtgcagcaatgtgctatctcatgcactaaatgcaCCACCTAGTCAGCAGCTACAGCTTCATTCAGGCGATAACCAGCAGCTTCAAGCCTCTTTCAGCACATCTAGCCCTGCAGCTCCAAATATCGTCGCCAGGCACAACGAAAGAGTCAACTTTGCTACCATGACAGAAGCATCAAGAACGTGTAATAAATTGCTCTGGGTTGAGTCTATCGTCTGTGCCAAGCTCCATCCCGGCTGGAACCACGCAGATAAGAGAAACGAGAAAGCGCCAAGATTTAAAGCCTATGGCGTCCTTCTTAATCCCTATCATTCAGAGTTCCTTAATCTGGGTGAACTAGTGTATATCTTAGATGACCTAGAGGAAAACTTAGACACCCCATCGGCACTTGACAATGAATTCTCAAACCACAGAACGTTTGATCGCCTACGTGCGAAAATACAAACTTCCTTTGGTATTTTGAGATATCTTGATAATAATAAAATAGGTGCGCTGGATGTGAATGCATTTAAATTGTTACCTGATCTATGGAGAATTGATGTTAGTAATAACCAATTAAACACCATACCAAATGACGTATTCAAGTATAACCCTAAGCTCTATGAAGTTAACGTTGGTAATAACCCTTTGACGTGCGACTGCAACTTGTATGGGATACACAATGTATCACAGCATGTTACAAACTTTACTGCTACATGTGCCAAGCCATTGTCACTTGCAAATCGAAAAATAAAGTCATTGAAGTTTGATGATTTCTGTGGTGGATGTTTAGGCAAAAAGTTATCGGGGAAAGGGTCACGTGATGGCGAGTACTACATCAATGTGAAGGCCAAATGTGAGGGTTTTGTCCGTGTGTACTGTCATGGCATGAACACAAGTATTCCCAAGGAATATCTCAACATGCAAAGTGGCCCTTCAAACAATTACGCCTTGGTCTTTGAATACAAGCAACCTGAAGTGGCTAAAAATGAATGCCAACGAAAATCAGGTGGAACCACGTACAGCGAAGCAGGGCGAAGCAACTTCACCAGAGTACGGCTTGTTCTGAGCCAATCTGGAGCAACAATCAAGACCGATGATTTTCTATTCGCCTCAACGAAAGGACACCGTCCACTGGGGAACACTACGGGACGCCAACAAACATTCAAAAGTACTTTAGATATCGATGTAGAAAGACGTAAAGTTCTATGGGAGTGTAAAGTGGTGGCTATTGTGGTGGTTGTAGACCTGCAAGCAAGCCTTGATCTAGAGCTGAATTCCTGCCCTGAAGAAGGAGTAACATCATGCATCGGGGCTCTAGGAATGGACGACCGTAGCATCATCGACGCTCAGATCACTGCGTCGTCAAACAATCCTAACTACGAACCCAGTAATGGACGCCTTAACCACATCAAGACCGCTAGTAAGGGTGGCTCTTGGTGCGCCAGTACGTCCGATGTTCATCAATACCTACAGATCGACCTAGGCAAGCAGATCACGTACTCTGGGATCGCCACGCAAGGCGCAGGCGAGGCACAAAACTGGGTTAAAAAGTATAAAATACAGAAAAGTGACGATGGCAAATTATTTAAGGATCACACGGAGTTTGGGATTCCTGTGGAATATCCTGGGAATCAAGATAACTTCAACATCGTGACCAATTGGTTTAGTCAACGGTTCAGAGCTCAATATATTAGAATTGTACCTACTGAGTGGAACAATGCGATATGTTTACGAACTGAACTTTATGGTTGTGACAATGACATTGTATCTGTTGTTGTGCGTCACAAAACCGACCTACGCTGCTGGAGTCCTAGTAGCGTGGACCAGTGCACCTTCCAAGATGGTACCGCCATAGTACTAAAACCTTACTGCAAAGGAGAGGGCGAAATGATGACCTTCGTCAAAGACAACACCATCAAGCATACATGTAGTGGTAAATGTGTTTACGTGGACAGTAATCATTTACTCGCATTGAGAGAACGCCCGTGTGATGAGTTTGAAAAGAAGACGACAAATGATGGATCGTATCAGATAATTCACAAAAGAACTAAGCACTGTGTTCAACTCAGCGATGTTAAAAAAGGAGAACTGTCTTTGGCAGTTTGTAATCAGAATCCAGCATCGTTTGAATTTTCTCAAAATGCGATCTCTCACTCCAGGCCCAAGATCTTTGTGAGTCGAACCAACTACCTCACGGTAAGCAGGCCTGGCTGGGTTCACTGCAAAGTCATTGCTGATCCGTGCTCAGATATACTGGAGCCGAACAAGACCGTGGCCAGGCGGCCAAAAGTTGTCAAAACTCGAGTTTCTACAATGGTCGAATGGGTCTTTATACGTACGAAAGACCCGGATGAGCTATGCTGGACGTTACTACTGCTCAGCGGCTAA

Transcript

alvinactis_v1_g2703

Protein

Uniprot

Uniprot term	Description
Q08345	Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens OX=9606 GN=DDR1 PE=1 SV=1
Q7YR43	Epithelial discoidin domain-containing receptor 1 OS=Pan troglodytes OX=9598 GN=DDR1 PE=3 SV=1
Q9P2N4	A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens OX=9606 GN=ADAMTS9 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF08685	GON	GON domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052787	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR035992	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR012314	Domain	Peptidase M12B, GON-ADAMTSs	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR000772	Domain	Ricin B, lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan