Genomic Location: chr_15:1333620...1525144
NR annotation: XP_031558480.1, vacuolar protein sorting-associated protein 13D-like [Actinia tenebrosa]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g27730 |
| Transcript |
| alvinactis_v1_g27730 |
| Protein |
| alvinactis_v1_g27730 |
| UniProt accession | Description |
|---|---|
| Q5THJ4 | Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2 |
| Q9VU08 | Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001880 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00627 all species → | UBA | UBA/TS-N domain | Domain | Interproscan |
| PF12624 all species → | Chorein_N | VPS13-like, N-terminal | Domain | Interproscan |
| PF06650 all species → | VPS13_VAB | Vacuolar-sorting associated protein 13, adaptor binding domain | Domain | Interproscan |
| PF16908 all species → | VPS13_ext_chorein | Vacuolar sorting-associated protein 13, extended-chorein | Repeat | Interproscan |
| PF16910 all species → | VPS13_mid_rpt | VPS13, central RBG modules | Repeat | Interproscan |
| PF16909 all species → | VPS13_DH-like | Vacuolar-sorting-associated 13 protein, DH-like domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041969 all species → | Domain | Intermembrane lipid transfer protein VPS13D, UBA domain | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR015940 all species → | Domain | Ubiquitin-associated domain | Interproscan |
| IPR026847 all species → | Family | Vacuolar protein sorting-associated protein 13 | Interproscan |
| IPR026854 all species → | Domain | Vacuolar protein sorting-associated protein 13-like, N-terminal domain | Interproscan |
| IPR009543 all species → | Domain | Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain | Interproscan |
| IPR031646 all species → | Domain | Vacuolar protein sorting-associated protein 13, extended chorein | Interproscan |
| IPR031642 all species → | Domain | VPS13, middle RBG modules | Interproscan |
| IPR031645 all species → | Domain | Vacuolar protein sorting-associated protein 13, DH-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16166 all species → | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006623 all species → | Biological Process | protein targeting to vacuole | Interproscan |
| GO:0007005 all species → | Biological Process | mitochondrion organization | Interproscan |
| GO:0019898 all species → | Cellular Component | extrinsic component of membrane | Interproscan |
| GO:0045053 all species → | Biological Process | protein retention in Golgi apparatus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19527 | VPS13D; vacuolar protein sorting-associated protein 13D | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
