Gene detail

Detailed information of alvinactis_v1_g28021 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_15:4984250...4990811
NR annotation: XP_028518062.1, uncharacterized protein LOC110249295 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g28021

atgtttgagatgtcggcaccgatggatccatgcattcatcgaaagtttaaagctcggaaagtaatgcagCTGTATGAAATAGACAATACTCTGGAGAATGAAGGCTCTATTGTTCCAACAGTACAGGATGTTTCATCCACGGAAAAGCAGACAAAAGAAGTTCAAGATAATCACACTCAAATCTTCCAGTGCACTAAGTGTTTAAAAACCTTCAAACATCAAAGAAATTTGATAAGACATCAGCGAGAAAAACACCAAACAACCCACGAATTTTCCTGTCCCAAGTGTATGAAGACATTTACAAGaaaacacgattttcaaaggcatgaacgacagtgtaccggactaaagcgtaagctggaagaaccagaaaagcactcacctcctgagaagaaacagaaactctctgacgaagaagtgattgagtatgaattgaaccatattcctgatgaaatgatggaggagtatgagggacctttcttcggtgatgaAGAATTAGAGCTAGctcagtacgacagtagagatacagtttggattgacatgattattaggctgatttatcagtataaactgattcccagctcagtagaaatgcatcgcagaagaaaacaaacagcaaacgtccttcatctcgaattaggagtggctgtgtacacccccctggagggagccagctacctccccctccccaaaaagatcaaagacaagaaggcagtgttaaacatccagaacgaggaccccaagtgtttcttgtggagtgtcctggcagcaaaacatcccgtggaccgacgagacaacgcgaaccgtgtcaaccactaccaaaggtatgaaaacgaactggacatgatggggatggagtatccagtaaaagtctcccaactgaaaaagtttgaaagacagaaccccaccatcagtgtcaacgtgtttgggtacgaacaggatgaactgttccccctctacatcaccaaagagaaaaaggagttacacgttaatttactcctctactctcaaggtgaccagaggcattattgtttgattagggatttagaccgtttattgtatagcatgaatcgacatgaacatcgcatgttccactgtatgtactgcttgcatggctttgtcaggcaagatttattggacgaccatgaaccccactgcggtcgtcacggtccccaaaagatcagattgcctgacgaagaccacgctaccctggccttcaaagaggtacaaaaacaactgaaagtcccgttcattatttatgcggattttgagtccattctggtggaatgcgacagcacccctttgaaggactatgcaagtgggactcaaaaaacacaacatcatcaatcgtgtgggtttggttatactgtggtgtccaccgtggaccagtacaaccaagccccagtggtgtaccgtggggaggattgtgtcgatcaatttttagaaaatttattagaagaggagaaacgaattagtgaaattttaaaagtagttgaacctatggtaatcacgggagatgaggaacggggttttcaacaggcagaggactgtcatatctgcggggatcccctcggggcagatcgtgttcgagaccacgatcatttgactggattgtaccggggacccgcccacaacgaatgtaatatcaattacaagtttaccgggaaaatccccgtcgtgttgcacaacctccgcgggtacgacagtcatcttatcatgcaagggttaggaaaactgaaatcggaaaagatttcctgcattcccaacaatacagaaaagtacatttcctattcagtgggaaatttagtgttcattgattccctccagtttttgaacagttccttggaacgtctagtagataatttaagtaaggagggggcggatcaatttaaggtacttaagaagtatgttgacagcgacaaactaagtttgttactgcgcaaaggtgtgtacccctacgaattcatgtctagcgttgaaaagtttcaaaacacctgttggcctccgaaagaagctttctacagctcgttgaaggatgaacacatcagtgatgcagattacgaacatgcgcaacgggtttttgaaacatttcaatgtcagaacttaggggattaccatgacctttatttaaaatcaaacgttctgctcaaatcactcttatgtatcgatgggtttcctgagggtatcgtgtag

Transcript

alvinactis_v1_g28021

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR038563	Homologous_superfamily	Recombination endonuclease VII superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala