Detailed information of alvinactis_v1_g28823 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_15:16457113...16485797
NR annotation: XP_031568315.1, exosome component 10-like, partial [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q01780Exosome complex component 10 OS=Homo sapiens OX=9606 GN=EXOSC10 PE=1 SV=2
P56960Exosome complex component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2
D4A1X2Exosome complex component 10 OS=Rattus norvegicus OX=10116 GN=Exosc10 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00570HRDCHRDC domainDomainInterproscan
PF01612DNA_pol_A_exo13'-5' exonucleaseDomainInterproscan
PF09772Tmem26Transmembrane protein 26FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044876Homologous_superfamilyHRDC domain superfamilyInterproscan
IPR002121DomainHRDC domainInterproscan
IPR002562Domain3'-5' exonuclease domainInterproscan
IPR010997Homologous_superfamilyHRDC-like superfamilyInterproscan
IPR019169FamilyTransmembrane protein 26Interproscan
IPR049559DomainRrp6-like, 3'-5' exonuclease domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR045092FamilyExosome complex exonuclease Rrp6-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0044237Biological Processobsolete cellular metabolic processInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071036Biological Processnuclear polyadenylation-dependent snoRNA catabolic processInterproscan
GO:0071037Biological Processnuclear polyadenylation-dependent snRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071039Biological Processnuclear polyadenylation-dependent CUT catabolic processInterproscan
GO:0071040Biological Processnuclear polyadenylation-dependent antisense transcript catabolic processInterproscan
GO:0071044Biological Processhistone mRNA catabolic processInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04952CNGB1; cyclic nucleotide gated channel beta 1-Ion channelsko04040deepkoala

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