Gene detail

Detailed information of alvinactis_v1_g30560 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_16:20031071...20034194
NR annotation: KXJ15646.1, Transposon Tf2-6 polyprotein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g30560

atgagcccggacgaaatagaacgagcAATGGCCACAACAGTTTGTCGAAGCTCTACACCTCTATCGGCATCGGCAGCACCAACATCGCCAAAGATAGACGGCCTAACAAAAGCGTTTGAGGATCTAGCTATGAGGATCGAGAGCAGAGACTGGCATATGGCAAAACGCCTCGACGATGTTACGGAGCGGTTGGAGATGATGGAGAGCTTCCGTGCGCCAGGCACAAGGAGATCGAACGTGACGTTTGTTGACATTCCATCAGACGAACACCTTGAAGCACCGGAGGAAGACGAACTTATGCGGGCCCTGGACGAAATAGAGACTCGGGCCAGACCACGCACAGTAGACCCAGGGCCTGGaagacctaaagttcgaccaactacctttgacggccactcgtcgtgggaggactacctggcgcaatttaatcttgtaactgagttaaaccgctgggatagcgtgacaaaggccacatacctcgcggttagcctttccggccctgcgagggaggtgttgggagacttaacagtgtcgcaaaggaaagacttcaccgctctgacgatggcactatcaacgcgttttggaacagaaaaccgtacagagatctatcgggcgtccttacgaactcggacaagaaggaaagacgagagcctaccagagctggcacaggctattcgccgtctgacaaggtgcgcCACGGCCAcagcagcgacggcaacgaacacaacagtggggacgtcagcaacaggagggacatcagcaacagcaacagcagcaaggtcaacgacagcagcagcaacagccgcaggaccaacagagttcccaacagaaccagacggcgggaaacgagtacctgtcgggcccacgggcttgagctcggcaggaactaccacgcctaatagaccagccgtaaagtcagggagagtggatgactgtggcgctgaactctacgtggatgtatgtgtacaggagatgcccgtcaaatttttggttgacaccggcgccaacatcaccatggtaaagaccagcgtctgggagcagatgtccaaccgacctgaacttgaccaagtggaggtgaagatggtcctagcagatggcagtacgtcgccgtttgttggtagaggactgttcgcagtagagttgggaaggaaagaggcggtccacccgatctgggtgggcaacatcgaatcggacgggatcctgggactggacctgatgcgcgtacttggaggtcagatagtactacgcgacggtcgctacacgatgaccttggacggcgataaggggagactggaaccaagcgcggagcagtcgccgccgatctgtcgtcgagttgttgtcaaggccaactatgtcgtcccaccacatagtgaagcgatcgtccctggagagttggtagaagcgggaaccaagatgaggggcatcggagtgttagagcccacggaacgtctcctgaagtccaaccaactgctcctggcacggaccgtggtcgacacaggaaacccaactataccactccgagtgcttaatccaacagatgtcccacgaacgatctaccgcaacacagtggcagcagtgtgcgagccggtcagcatagtcaacgtaaagaacccaaccttagcagtcagccgcgtagccgagggggacactgacggaccaccgatggccacgagcgagcacgcagtcaaggacactatcccaagacacctgatggaccttacagagcgcagcagccgactcctcgacgaacagcagcgaagtgaactcacagccctccttacagagtaccgggacgtattcacagcatcgcctggcgacctcggacggactgacctcgtaaggcacaacatcaacacgggagacaacagaccaatcaaacaacccgcgcgccgcctaccgatgcacagacggacggaagccgagcagcacgtgcagcagatgataaaggacggaataattgagccatcatcaagtgcgtgggcttcaccgatcgtactcgtaaagaagaaggacggatctacgaggttctgcgtcgactaccgcaaactgaacgaggcgacgatcaaagactcctaccctctaccagtggcggactcctgcttcgacgcgctatcgggatcgcagtggttctcgacgctcgatctgtccagcggttattggcaggtcgccatggcaacggaggaccgtgagaagacagcatttacgacaggcagtggtggtctctatcagttcaccgttatgcctttcggattggtaaacgcgccagcgacgttcgagcagttaatggagagagtgcttgctggacttccctgggacgtgtgcttggcatacctggacgacatcatcgtgcatgcagacaacttcgagacggagaaggacaggcttcgcgaggtgttcagacgcatgagagacgctggattgaagttgagtccaaagaagtgccacctgttccagcagtcagtgacgttcctgggccacgtggtcagcgacgcaggactctctacggaccccgaaagattcgagcggtggtgggtggccggttccggttggagttaccgacctacgcagcttccttgggttgtgctcgtattaccgcaagttcaccaagggcttcgcagagatagcaagacccctctaccgactgacagagaaaggcaaagacttcgtgtggacggaggagtgcgacgaagccttcagccagctgaagaccgccttgacgacagcccctatcctggcgtacccctccaccgaagaccccttcatcctggatactga

Transcript

alvinactis_v1_g30560

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan