Gene detail

Detailed information of alvinactis_v1_g3074 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:4420406...4442564
NR annotation: XP_028519565.1, uncharacterized protein LOC110254253 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g3074

ATGTCAAAGCAAGTGCCAGAAGAGGCTAAGCGTTTTGTTCGTGCTACATTACTTTCGGCATCAAATGGAGTCAAGCAATCGCGATTTTGTCGCGACTATCAAACATTTACAAGTTGTCAACTTGATTGGCGTAAAATGGGATTTAAGGACCTTTACGAGTTTCTGCTGGCAATACCAGACGTTGCTAGACTTGAATATTCGTCAAAGGAAGCGCAAAATCTTGTATTTGGCGTGACAAAGAATGACATTTATGCGTCTAGCCACGCTAAAAAGGCTGGCATGAAAGGTACTGGAGCCAAACCAAGACCACCTTCAGAATGGGGAAAACCTTCTTATACATCTCCGAAAAAGCAAAACGATAAAGGCAAGCAAGGCAAAACGAGAAGTATTGATGTATCCAAAGACTTGTCTTCCTTGAAAGTGACAGTTCCCAATGCTATTGAAGACATACATGTATATCCCTGCAATGAACAAAATCTATATGGAGTTCACATAACGAATTTACCCTATTCATGTACAATGGAGGAACTACAGACATTATTTAAAGAGTACCCTTCCTTTAAACTTTGCAAAGTTATAGACAGCGGTTCAAGGTCCTTTGCTTTTGCCAAGTTTGGACGGGAGCAGGATGCTTTCAAGGCATTAAAAGAAAAAGATGGGTTCAATCTGAGGGGATGCAAATTAAAACTTAACAAAGCAACTGAACACATGAAAGCAAAACAAAATGTGAATGAGAGCAAAGTGAGTCCTCCAAAAAATCATTTTCTCAACACCAAATCGCCATCACAAGTGTTAGAAAAGCAGAAATATGCCAATCAGCTTGTCGTTAATGATGTCAATAATATTCTGTCTGAGCAAGTGGACATATGTGCTGACCGTGCATCCCTTACATTTACTACAGAAGAAGAAGCTGTCATGACTCTGAATAACATGAGAGAACATTCTGTCAATGGACACAAACTGACTTTAAGTCCTTCAATTGTGACTGAACAAAGAGTACAAAGGCCTAGTCATGTGCAAGATCCTAGTACATCTCAAAATTTATCAAGAAGTGGATCAACTATAACTACAAGTTCAACATTTAATTCTACAACAAACTTTGATCGATCTGGCACTTCTAGTTCGTCAAAAGAGAGCATCTTCAGTACTTATGGCACTTCGGCATTCTCTCGTGAAACTAAAGAAGAAAGACTAACTGATAAGTCATCAAGTACAGGAAGTCCTAATTTacaacagcagcaacaacaacagcagcaacaacagcaacaacaacaacagcagcaacaacaaccaaagcagcaacaacaacaacagcagcagcatcaacaacaacatcatcaacaacagcatcaacaacggcatcaacaacaacagcagcagcaacagcagcatcaacagcaaccaaagcagcaacaacagcatcaacaacgacagcatcaacaacgacagcatcaacaacagcaacatcaacaacaaccaaagcagcaacaacaacaacagcatcaacaacaacaacaacatcagcatcaacaacagcatcaacaaaaacaacaacaacaacaacaacatcaaAGTAATAAACAATCTGGTTCTAGTAATTCACCAACTCTATTGAACTTACCTGCAGACCAACCTCCATCTTTAGAGCGAGATATTCATTTGATATTAAGCAAAGAAGACATGGATAGATTATGTAGTGCCAGTGGGCATCCTCTTGTACAAATATTTCAGGGTTTACCTGATGAGATGGATATACTTGTCACCGAAGTTGTAGATGCTTGTCGCTTTTGTGCAATTATTGACAACAAGAGTGGAAACTGGCAACAGCTAGAAGCTCTAGAACTGCACTTACAGAAAACATCAATCGATAAACCCATTGTCCCTCAGAAATATTCTCTTGGAGCTGGTAAATTTACAGAAAATAATATCTGGTATAGATGTTTTGTTATCGATGTTTCATGTGATCATCAATTTATCAAAGTATTCTATACTGACTATGGCAATGTGGAATGGATACCACTTGAACGCTTCTCATCGTTAGACTCAATATACAAGGCTCTTCCTCCACAAGCAAATGCTTTTCACCTTACAGGTTTGGAAATCAATTATTCCAATTCTGTTGATACTCTGAGGGAAGGTTCCAAATACTTAAAGGATTTAATTGGTGGTAAAACCTTAATAGCCAGGAGAAAATCCCCTATTAATGTCAAACAGGCACACATTCTAGAGGTGGAACTATTCAGTACAACATCAAATGAATCTATAAATTGCCTGATGGCAGCCACTAGCTTTGTGAGTAAAGTGACGATAGAGACATCTCCCACTCCCAAGCCCTTGGCCATGCCGCAATCTAGTTCAGCCACACCTGTCGCTAGTAGTCCTCTACTGGTAGCTCCTAAAGATAAACAAATGTTTAAGTTGAAGATTTCGTGGGTACAGAATCCTCAGCACATCTTCTACCGCCAAGTGACACCAGAAATGGAAGAGTTGATGAAGATGATTGAAATGCAGTTGAAGAGAATTTCCAATTCAGATATGTTTTTCCCACGGGTCACAGAGAATGCTTGTCTTGTTTTCAAGGACAAAACCCGAAAACGAGTGAGGGTTCTTGAAAACATAACAATGGCTGGAGCTATATCAACGGTCAAGGTGTTATGTATTGATTATGGGAATCAGGTCACTACCACACCAAAATGTTTGTTACAACTTCCCGAGTCCTTAAGAACTATGGAGCCTACGTGTCATGAAGCTCGTTTAGCAGGACTAGTGCTACCGTTGAAGCTTGCAATGTGGCCAAAACTAGCAATGGATATTATGTTTAATGCAAGGAACCAGATTTTGGATGGTAAAATCATTACGCAGAAGAATGGAGTTCCACATGTTGAGCTTTACAACAGCCAAGGAGAATGTCTTAACAACAAAATCATGGAAACCATTGGGTTAGATAAGGGAATGAAAGCATCGCCCTCTATGCAAAGTGTTAGCTCTACTGATTCACTAGAATCTAATGATTCTAGAATGTCTAAAAGAGAACTAGGACCTGCCCCTATTTCTCCCATGGCTGTACACCCTTTCAAAGACCATCAAGGCTATCCCAGCTTACCCAAACCTACATATGAGCAAACCCATCAACAAGCAGCCAAGCCATCTGAAAATGCTTTCAATACCAGTCATGTGAATCAACATCTAGGTGCTGTAGGTAGTGAGCTGCCTATGCAACAGCAACCTCACAGTACCAACCTTGATCTCAAGCCCACCATTAATGGAGAGCCAATTCATACCCAATCAGAGGGTTTTCCCCAGGGACCAGGTTTCTACATGCCTCCGCCACCAAGTGACTCCAGAGAAATACTTCCTAGAccacagggagcccaagcctcagaaatacatgtaaatgatgggctttctgtgcccagacttcctgggcaaagtcaacaccatgcagctttagatggatcacaaatggccaggaatgggggtggattgcaatctcgtgatcaaatgaaacgttccccaacaccaggtgccacatgcccacagggagcccaagcctcagaaatacatgtaaatggtgggctttctgtgcccagacttcctgggcaaagtcaacaccatgcagctttagatggatcacaaatggccagcaatgggggtggattgccatctcgtgatcaaatgaaacgttccccaacaccaggtgccacatgcccacagggagcccaagcctcagaaatacatgtaaatggtgggcttcctgtgcctagacttcctgggcaaagtcaacaccatgcagctttagatggatcacaaatggccagcaatgggggtggattgccatctcgtgatcaaatgaaacgttccccaacaccaATGGCACAGGAAGCCCAAGCTTTACAATCTAGCCCTGTCATGCCAATGGCCACTCCTTCTCATCCATCACTACCAAGCAATGGACCATTAAACAAACCATGTTTGCAAAATGAGGATTGGAAAAGAGAAAGGGAAGCCTTGCTTACGAAGAGGCAAGAGCAGGAATTATGTATAGAGAGACTTGGTAAACAAGAAGTACCAAAGCCATCTGTACTGAATCTTCAAGAGCTTAAGGAGAAGCTTGCAAAGCAAGTCAGAATAAAGGAACTTGAAAATCAAGTTCTCAAACTCAAAAAAGAGATAGAATCCTTAGAAGGAACAAAAGCTCAATTACAGTATAATATCATCAACGACTGA

Transcript

alvinactis_v1_g3074

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12872	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR025605	Domain	OST-HTH/LOTUS domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR041966	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23211	TRANS-GOLGI NETWORK INTEGRAL MEMBRANE PROTEIN TGN38	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala