Gene detail

Detailed information of alvinactis_v1_g30767 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:3132779...3147299
NR annotation: XP_031550770.1, nischarin-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g30767

ATGAAAATTCGTAAAATTATCATCCCAGCGGCCGATGTTGTCGACGGATATACGGTTTACTTCATAGAAGTGTTCATAAGAGAATACTCATGGCTGATTAGAAGACGGTACCGGGAATTCTATGAGTTACATGACAAGCTTGTAAAGAAACATGATGTTCAACAAAGCTTTTTACCTCCAAAGAAATACTTTGGTAACCTTGACATTGACCATATAGAGCAGAGAAGACAGGCACTAGAGGAGTATTTACAGCTGTTGATTAAGATATTTCATGAGCATATACCAGAGGAACTGAACTGCTTTCTTGAGGGAAATAAATATGATGTCTGTGGGGTTACTTATTCTCTAGCACAAGAACTGTTTAATCAAGGAGAGGGCATCCTAAAGAAAGAGGAGACTTACACTCTAACGCCACTGCAACTGTATTGTATAACAAAAAGACTGGAACTTCCTGTCCCAACTTGTGATTCGCATGTTTCCCATGGAGAAATTGGAAATTTATATGATTTCATCCAACACTTGAAACATCTGAAGATTTTTGCACAAACAAAACAGATTGAGCTCAGTGAAAATGTCAACTTCAAGTGTGACTTGGCTCTTTTCAAGTCGTTATCATCTTTGGAGATGTTAAGCTGTGATGTGGAACCATTCCAAGGGATTTACAGACTACAACAACAGCTAAAGTCGCTGGTAGTTCATAATTCCATACATCTTCTCAAGGATATTTTAGTAGATGAAGAGATTTGGGAACAAGGAATCCTTGAAAGTGTTCAAGTCGATGGATCGAGATCTCTCAGTCCCACCACAAGCTACAGGAGATGGCAGAAGTTGAAGTTCGCAAACTTTAGCAACAATCAACTGCCATACATTGATGAGTCTGTGGCTTTACTCCCTGAAGTAGAAGAACTCAATCTCAGCTATAACTGTATTGAGAGCATTGAGAATCTTCAGGGGTTGTCTGAGTTAACAAACCTCGATCTCTCTCACAACGTAATTCAGTGTCTTGGCGAGAGTCTGAACACTAAGTTGGGTAACATAAAGCAGCTTAATCTATCATCAAACCAACTTAGTAATATCGACGGTCTAGAAAAGCTGTATTCACTGGTCGAGTTAAATCTGAGCTCAAACCAGCTTTCTAAGGTTGGCACTGTATTGCTACTCGGTGAGCTTCCATGTTTGGAAATCTTCCTTCTTGTTGGGAATCCACTGACCAAGGAAAACATGTATCGCGTGCGCGTCTTGTCGATGTTTGACGATCGTGCAAACCAGGTCGTTCTCGATGACCAAACGACGACATCTCGAGAATTGAAAAAGGTGCAGGAAATAATCAACGAAGAACGAAGTTTTGAAATCATCAATTTGCCACAAGCTGCCTCCAGTACACCAAGTAAACATAAACCAGGCCACAGGAAGATGAAAAGTATTGATCGAATTATCGCGTTAGAAGATCGAAGCAACGCAACCGACAGTGGCAGCTTGACAGACTCCTGCGCGTCCCTTTTGGACGAGAGTGACCTGGAGTTCCGGTCACGTGTCGAGAAGATCCGTCAGCTTGGCGGCGACAAATGGTTGATAATGTTGGGGGAAATAAAAGGCGAAGACGCGTCGTACTCGCAGAATTCCAAAGGCAAGTCACATCCAAAAGATCTTCGCCTACAAAAGCCTGATGCAAATTCAAGTTCTGATGATCGTCAGGAAAGCCCATCCAGTGAAAACAGCAAATACAATCGCGAGACCTTTGTTGCCAAGGTTGCAGGTGTTGAGCCGGGAGAGACTGGTACTGGCGTGTGCAGGCTGCATTTCGGTTTTACGTGCGAGCTGGAGGAACTCGTACGCAGTAAGCTGGACGCTGATAACAACACGACATCTGGTACGTACATGGTGGAAGTAGAGACACGAAGTGAAGCAAAGACTTCCAACTATGACGATCACCCTGTGTACGAGGAGAGAATGGTCGGTCTCGACCTCACTAAAGGCGTCATTCTAGAGATACAAATCGCTAATGGAAAAACCTGCGCAAAGCATAAACTGGAGGATGTGAGTAGTGTTGATATCCTGGACATCGAAGGCTCCTACCATATCGACATACGGGACACTTATTCTAAAGACTGGCGACGTCACAAGACAATAACCAGCCAATCAACGACAGGACAACAGAAAGATTACCGTCAGGTAGCCAGGTATCGCATGCGCTCAATAGCGGATGCCGCTGAGCTGTTTGTGCTGCTGTACAAGTTTATCACGAAAAGTTGGGAAAGtcGTTGTGTCCAAAGGCAGCCACCGAGTCCAAGTGCTTCAAAGCCTACCTCAGCCTCATCAGTATGGACCAATCCCCTACGGCTACCAGACGATGCGCTGGAGAACTTCTTCAAAGATTTCTTAGGAGCAACAAAAGAAGCGAGCAATACCGCTGACCGAAGTTACCATGACGGCAAAGATCGCGTGCGCAACTCTGGGATCCATAGTACTTATCATTCGTTGCACGCTGATTTTATCGACGCAGGGACTCTGAACCACAATCGAGTGCAAGAGGAATCGGTTCGCATGGCATTGTGGGTTGGCTGTCTCCCATACCTGTTTCCTGAACACGAATTACCGGTTTGTCTGGTTTTGACTGACGTCAACATCTTCCTTTTCCACATATACCAGTACTCTTCCTTTGAGGCGATAAAATCTCCTCTCTCCATCAGGAACATACACAAAATGTTGCATTGTTTTTATAGCATGTCATTGCGAGCCCTCAAACAAGTGGTCATCGGTCTCTACGACCAAGGGTTCCGTCTTGAGGTGCGGAATGACGGACCTCGTGGGACATTCACGTTCCTGACACGCGACCCTGAGAAAACACGTGTCTTCCTTGAACGACTTTACGAAGCGTTCGGCGAGTCGAGCGAAGATGAGAATTCACTACTCTATCGCAGAGTGAGCTTTGATTCCCGTAGCAGCACCGTCCCGTCGTTTCTGTACCCCGACGAGCTCAATTTATCGAGATTAAAAGAGAGCTTATCGACTGTTCTGACCGACGACTCGGTGAAAGACGAAGATTTATTGATGTATTCGATTGTTCGTGAGCTTCCGGAGGATTCGCTGTCGGACGTACGAAAAGCCGGAATTCTAACGAAGAGGCTCCGAAGTCTGATCGTCACGAACTCGAAGATCTTCTTATGCGACGAAGACCACGTGCATTGGCCACTCCCTACGTTCGTGCGTGCTTTACCCTCGACTCCTCAGTGGGTTGTCTCGAAATGGCGGGAACTGAATAAGATCATAGGAATCGATGTCTTTGATCTTGAGAACACGAACGACTTCGTTGGTTCGTATGGCTTATCGCTAATCTTCGACGACGAAAACTCTGTGAGCGAGGAGGTCGAGAGCATGGCCTCAGAGACACATATCTCAGTATGCTGGAATCTAATCTTCAGATCGTTAGACGAACGAGAGCAGTTGCACAGATCGCTCTCTCAGGTCTGGAAGGATCACTTTGAGGCAGACCTGAAAGTGACGCACAGCAAACCAAGATCCCTACCATCACCCCCTGAGAAAGATACATCGGGCTACCGTGGTGATTTGACAACTTCCCCCGTGGGGACTCCTGTGGAATCAAGCTTTAGGAAGTCACATAAAAGGATGGGGTCGGATAATCTACCGCTGCTGAAAGCAACTTCTCTTGATTGCTTGGAGTTCCTGATGACCCTAGACAGAAAGGCTCTGGACGGGTACTTCAATAAATCCATTGCGCAAAAACCAGACAACGAGGAAGAGAAATTACTCCATGTTTTATGGACTGGTTGCACCCCTTATCTGTTCCCAACAAAGGAAATCCAAGTTTGTATCCTTCTAAGCAACTTGTTCATCTATATCCTAGCAGACAAGACAGATGAACTGCTTATAAGCAAGAAGAAATCCGTCAAGATCCGTGGCAGGGACAAGAACTCCAAAGGCATCTGTTATAACTTTGTTACTACATCGAGTTTGCAGCAGGTTTGTGTGGGTCTGTTTGATCAGACGTTTCGCCTGCAAGGAGTCAGCAAAGACGAAACATTTACACTGATCACGCGGGATTTTAATTTAACAAACGCGTTCTTAGAGTGTCTCAACGCCGTGTTGTCGTCCAACACTTCGACGCTCGAGCTGGATAGACAAGACAGTGTTACGAGTATCTACGACTCACACGCCACCGACAAGACGTGGCCAAAGTCAGAGTTTCTTCATTCCGAAAGCGGGGTAAAGTATGTCTACCCGAGCGACGATACGCTGGAGATTCTCAAAGATGCGATAGCGAAATTCAGCCAAGGATCAGACCTCTGTTCGTCCATCTATGATGTTACTATCCTAGTGTACCTACTAGTGTTTCATGAATGGGACTCGGGTCTTGAAGAGTCGCGTACGTTGATTATCATGGATACAGCACTTTGTCTCTGTATCGAAGACCATGCGAATTACCCCCTGACACTCTTTGCTACGGGACTACCCGATAACCCGCAGTACCAGGTATGGGACGTACGGGATGTAGAGACACTATCCCGTATAGAGTTCTCCGACTTTAGCTCGTGTGATTTTACGCTGGTATTCAGCCCCAGTGCGCCGGAATGCGAGAAGAATCGTGAGGACTTTGATTCGGCGAGTATGGGAGAATTGTGTGTCATTACACACTACACGCCTGAGGAGGTTAGAGAGAGTACTTGGAAGATCGTTGCACCAACGTATGAAGAGAAGGAGAAGTCACTTAGTTTGATTCGTAAATTGTGGTCAGACATTCGCGGAGGAGAGTTACCTGTGATTAAGGGGCAagacagtaatgtacagtga

Transcript

alvinactis_v1_g30767

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00787	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001683	Domain	Phox homology	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15454	NISCHARIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24095	NISCH; nischarin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala