Gene detail

Detailed information of alvinactis_v1_g30859 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:4429289...4433818
NR annotation: XP_020912532.1, uncharacterized protein LOC110250265 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g30859

ATGGATGAAAGTCGCTTTCCTTGTTTTAACCATCCATTTTACCCAGATGGCACTCAAGATCAGAGTTTTATCGACTATGGGAGTATCTCATCCTATGATTTAGACATCAGCGAGGACAGTACTGTTACAACAAGCTCAAAACATTGTCATCATGGCCATGATCAGAACTTCATTGGAACACATGCTTCTATTCCTTTCCTCCCACCAGCTAAGTCTGTATTCCCCAGCAGAATCTTACCTGATATACAAGTCAGAGCAAGTAAATGTAGGACAGACTTTAAACCAACGATAATCAAACAGATAAGTGATTTTTATAGAGACTTTCCAGATATTGGTTTGGCTGCTGGTAAAGACATAATCAACCAGGAAGCTGACAGTGAGCCATGGAACTTGGGATGTCTTCCTAGAGTACAAAGAATACACCAACTAACCACGGACGGTCAGAGAGCTCTTCTGGATCCTAAGAATGGCATCGAACGGTTCTGTAAATGGTTTGTAACAATCCCACTCAAAAAATATGCTGACGTCAAGTTTAATAAAACCACAGAAATACATATTCCAAAGGGACTTCGTGAATCAATCCAAGACATTCCCCCAGAATTGCTTTTTGATCTCACGAATGAGAGCGTTGAGGAACTGAAAGATGAAATGTTGTACTTTGACCTTCTCCAAGGAAATGTATTATCTTATTGCAAGCTGCCTAATTCGGGAGACATCAATGGCGCGCTGTTCTATCCAAGTGGATCGACCTTGGAATTGctgaatatgaaattcgtgaaatctgaaagtgtaaatatagataattctgaGGAACAATGGACATCATTTTCAAAACCAATTTTAGTTGACGCAGGAATCGATGTTACTGTGAATGGTGCTATCAGACAGATCGATGCTGCATATCACGAACACGGTGGCATCACTATAGCAACCCGGTCACGTCACAGTTGCTCTTTTTTCAAAACATCAGAGGATATTTCAGAGAACACCCTTCATACTATAGACACTTTTGAATGTGAAGATGAACTTGTTAATGTGGCTCTGAGTCCATTTATTCATGGAGACGCTGTTGCTATCACGAAAACTGGGCACATCCATACATGGAAATGTGGCAAGAAAAGTGACATTGCAAAAGTCCCATCTTTAGCCCCAGAGAAAAAGTGGCCCTGGTACCAATGTGTGTATGCAGACCATCCGAGGTGTATTGTAATAGTTAATCCAGTGGAGGCAGACATCTTTGATCTCAGAGTTAATAGTTTGTCATCCAAAGGGTTCTTCTCCATAACATCAAAGCAAGTTGAACTTCATGAACGCATATCAGCAGTACAACGCCACCCTGACAATACTCATCATTACCTCATGGCAACAGACCAATCACTGATGATCATGGATGATCGTTTTGTTCACCATCCAGTTTTAAAATGGCACCACCACCTTCAAGATCCCGTTCAGTTTATTGAAATTGTACCAAATGTGGTTCCAGATTCTAATGATACAGTTGTTATGGTAACAGGATCATATCATCGTGAGACCCATTGTTATCAGTACTGTAGTGGTGAACGTAAAGTATCACGCACCTTGGCAATGATGGGTAACAGTGTTGTCACTCCACCAGTGTCAACAAGGTTGCCATGGAAGGTATCTTCCTATGATGAGTGGCCTTCACTTCTTCCTATTTCAACTCTTCCCCTCTCGTCGGCCCTTGAAGATCGTCTGACCACCCCACTAATTGGCATCTCCTGCATCCCAGCCACTTCACAAGCCAAAAGTGGGTTTTCAGTTCTGCAAATGTCTGCACCAGGCGATATATTTTACCAGCCTTTCATTCCAAGAACTAGAAACCAAGAACACCAAGGTGACCAAGGAAACCAGATGAGAGATGAAGCAGCTGGTATGCAAAATCTCTCATGTCAAAATGTTGCATTCTGTAGAGAGTGGATTAGAGACCTTATTGCAATGGAGCAAGACAATGATGAAATACAGAATTGGCCACTGAAGTCAAATATTCTAGAAACTGACTGCCACAGTCAGTTTGAATCTATGATATCTCTAGAGGAACCTCATCCATCCTGTGCTCTGTGCACAGATGATAGTGGAGGAGTTTTTGAAAGTGCCAAGACTAGACATGATGCAGGTAGTTGTGAATGTCCACGATGTGGCATTGATGTCGTCACTGGAATACAGTTACAAAAGGCAAAGAAGCAAAATGATGTTGCTACGTCTAGACCTTGTACACTTGGGGAACAATCTGTCAATTTGAATATTTTTCCAAATGCAAATGAATTTAAAAATTGTGTAAGCCAAGGCTTCCTTCAGAATTGGTACTCCACTGAACCACGTCCATTGGAACTCATTAATACAACAGATGATACAAATAATAACAGCAAAACTCTAGATAACCAGGAAGGGCAACCAAAGATTGTAGTCAAACCTCAACCTGACAGTGAAGAAATGCTTGAAGTAAAATGTAATATTCAAGGCAATGTTTCCATTCCAAATGACACTTCTGAAGAAAATGTAACTTCTCCATtgacaagcagtgtttccatggcaacaccccagccaatgacaagcagtgtttccatggcaacaccccagccaatgacaagcagtgtttccatagcggcatcccagccaatgacaagcagtgtttccatggtgacgccccagccaatgatgagcagtgtttccatggagacatctcaaccagcaacaagtaaactttccCCAGTGAAGAAAACCAAGAAGAGAAAGCTGGACTTATCAATGGGATTTTAA

Transcript

alvinactis_v1_g30859

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20642	TAF1C_HB	TAF1C, helical bundle domain	Domain	Interproscan
PF20641	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049090	Domain	TAF1C, helical bundle domain	Interproscan
IPR049087	Domain	TAF1C, beta-propeller domain	Interproscan
IPR038801	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650	Cellular Component	fibrillar center	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan