Gene detail

Detailed information of alvinactis_v1_g3088 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:4783525...4810362
NR annotation: XP_020914418.1, S phase cyclin A-associated protein in the endoplasmic reticulum [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g3088

atgaattcaccgggatgtatccatatacagccctgggttgtatatgaatacatcccgAAGGGAGTCCATAGAACAAACAGTCATGATCAAGTAAGAAGACTTGTTGAGAAAGAAGGAAGAACAGCTAGAAACCTGGTCACATGGTCAGTGCCTGTCAATAATGATCAAGATGATGTAAGGTCCAAAAGAAACACGGCAAGAATAATGTCAAGAAAAAGGCAACAAACACCAGAGAAATCCGTTTCATCAGAGCGTGATTCCTCCCCGGCTCACAAGCGCGGCTCAAAGTCACCAAACAGGGGGAGATCTGGCCGTAAGACATCGCAGTCATCGACTGGAAAGAAGAGTGACTTACGAGCAAGATACTGGAGTTATTTGTTTGATAACCTGAAGCGAGCAGTGGATGAAATTTATAGCACTTGTGAGACTGATGAGAGTACGGTTGAATGTGAGGAGATGATTATGATGCTTGATCAGTGTCGGCGTGACTTTGCTGCATTGATAGAGAGAATCTGTGTGCAAGATGCGTTTGAAAAAGCTGACTACAAAGACAGACCCACATCTTTAGCTTGGGAAGTAAGAAAGTCTTCCCCTGGAAAATCCCTCGTCACCAGTCCCTCTACTGTCGAAGTTGAACGAAGCATACAAAGCCCAGTGAGGAGCCTGGACTTTAGTAATGCTCGTACCACCTCAACCACCATAGCACCCAAACCAACGGTCCCTACGCAATCCAGTGCTGTCAAGCAAAATGGACCTTCGTGGGCTGATAGAGTGAAAGGTACCCCACCAACAGTGTCCCGTACGACGAAAATAGTGCCCTCCAGTACGACAGCCTTTACCTTGAGTCAAGGCTTGCATGCATGTGACAACCATAAAAATAGCAAGAGTTGTGCCGATACAGGTGATGCTGCGGACGAGGAGGGCTGGGAGACAGTCAGACATGGCAAGAAACACACCCCTCAAGGTAACCATGGCGACGCACGAGCCAATCGAATTAAACAGCAAAATTCACAAGACAGGGAGACTGGGAGGTCCCCACAGAGTAACCATGGCGATGCAAGAGCCAATCACAATTTGCAGGCGAAGGAAACAGGGAACACTCCACAGAGTAACCGTAGTGATACAAGAGCCAATCAGGGGAAGACTGGGCTTAGGCATGGTATGGCTAATGGATGTATCAATGACGATGTGCATGGGAAACTCGACCCTAACCTACTCTCGCCTCCAAGCCAACGAAAGATCTCCCTCACATCTGAGGAAGATGATGACCTCGCCATTCCTTTGGaggacagcgaccttgaacaagagcaggagctggaagcagagcatgagaaggCTATCTCGGATGCCATTGAAGAGGAGGAAACGCTGTCCAAAGAGATAGAACAGTGGCAAGAACAGGCTCTGGCTTCAGCCATTGAGCATGAGCAGAGTCTCAACCTAGAGATTGCTACGGTGGAAGCATTTGTTACAGCGTTGAATGGAGATGTTGAAACCCCGACGTCTGAGTTGGAGACTGAGACTGAAGGCGAAGGAGATGGTAACAGTGGCGGGACTGCAGAGGCTTCACTAGAAGACTCTAACAAGGCCATTAGTTGGGACGAGATGTTGGCAAATTATGAATCTAAGAGAGAATCTGGGGACAGCTTGAGTTGGGGAGATACAGTCGAGTGTGCTGAAGAAAGGCCTCCAGGTCGAGCTGTAGCAATGCACCAAAAACTATCCGCACCGTCCAGAAAAAGACCGTTGGCTGAGAAGATTCGTATCCACGAGGAGAAACAGTTAAAGGCACGACAACAAAGAGAGAGACTCTTAGAGGAAAGGCTACAAAAACTACAATGCTTATCTGAAAAGGTCACAACTGTCCGCGAGTTACAAGAAGACCTGATTCTAAGCCGTCAAGCGTATCTGTCAGAGAAACAAAAAAGAGCAGAAAAACAACGACAGTCAATGTTGCAAGTGAAAGTACGAAAAGCTCAAGAAGAAGAAGCAAAGGTGAACGAGATTGCTTTCATCAATACGCTTGAAGCACAGAATAAGAAAATTGAAGTCATGTCCAAGATCCAGGAACACGCAGCGAGGTTGCAGGATTTACAGGAAGAAAAAAAGAGAAAGAAAAGAGAGGAACAACAAGCCAAAGAAAATGCTGCACAGGAAAGACGTCGTCAACTAGAAGctgatcgattagcaagactggaagaggttcaacaacgtaaacaagaacagGaagcaaaatacaagaaagaaaaaatggaaaaagaaaaggcaagagaggaagcggcaagagaaaaggCCAAGCATGTGGAGATGCGTATTGCCGCCAAAAAGGGAGCGTTACAAACAGCTACTGAACAACTACAAGTACGAATTAAACAAAAGCAAACAGACCACACAAGACGACATGAACAACAATTGGAACAAGTAAAGGAAAAGGCTGCTGGGATCTCTAGACATCCCACCCAAGAGGAAGCACCAACGGTTACTCCTTACGAAACCAAGAAAATATGTACCTTATGTAATGTAGAGATTGTATCTGAAGTATATTTATATAGTCACCTTCGAGGTAAAAGACATCAACAGGCGCTATTAGAGAGCAGTGGAACCAAAGGCCTGACAGAAGATAAGGATACCATGTCGTTATATCACATCAAAGAAATGTCCAAGGACCAAGCAGAGCAGCGAGAAAAAGCTGATGTTGAACGACGAAAAGCCTTGAAGAAAAGAGCTAAAAAACTTAGAACTAGAATGGCAGCTAAGGGTAGAGAATACGAGAGTACGATATCAAACACGGGACCATTAAAACAAGACTCAGCTAAACGAGCGAGGCTTCAGAAAATCGTCAAAGACATTAATCGATATCTACAAGTGCAGAGTTCAGGGCCGTGGCCGTCGAATCGCGTTTCTTTATTAGACAGATCTGTTGGAGAACTTATAAGACTAGTAGACGACAAGGCTGATAAAATGACGTTCTGTAATCTTGGAGGTTTGTCAGCCCTGGCTCGAGTATTACTAGTGGTTGATATATCGGATACTAAAACACCGTCCACTCCCATTATCTCTAATCGAGTTCTTTGTCACGTGGTCCAAGGCTCTACTCTGGTATGCAAGGAATGTCACGAAACAAGTCAATACATGGTGTTTACCAACAAGCTTGCGTCTGTGGTAGATCTACTTGCTTTTCAGATCAGGAATTTTTGCTCAGAAAACACGACAGTCCAAGCAGCCAAGAAGACGGCAGACAAAGATGGTAAAGATGCAGCTTGCACGCGTTGTCAAGGCGACCCGTTAGTATCAGCGTTATTCAGTCTCTTAGCAACCGTGCTAGAATATCTTCCTCAACAAGAAGGAAAAGCATCATCCGCCGCGGTACAGAGAAATATTGATCTCATAAGTTACATCGTGTGCTCGGACTTGATAGATGACATACGAGTGTATTTAAACTCTATACAAGAACCGTTTGGTGAAGAACCAGTCATCGTAGACATGGTGTACAACTGCATGAAGTTACTCTCATCTATAACACTGTATCTGGGATCAAGGTGTGGAAATATCTTTGAAGCCAAGAAAGAAGACACCACTCAGTTTGTCATCACATTCCAGCAGGCAGAGCTTGTTGGTATAATGTCAACCCTATATTCCATGATATTATCAGCGGGCCAAGCGCGACATTTTTCTCCCCCACCTGTCCTCCCTGAGTACCAAATAAAAGTCGCCACCGAAGGCCTACGAGCGCTGAACAACATGGCATGCGTGGACCTCAAGGCGCTGCAAAGTTCGCTTGGCAGCGAAGGTGTTTCCCTAGAGTTTCGTCACATTGTTAGCTATTTACTGTGGATTTGCGGAGAGGGGACCCCTGAGGAACTTCTCCATGAAGTCATTCTCATCGTTGGCTACTTTACTGTCTTGAATCAAGAGAATCAGATATTTATACAGTCTGGACGTAACCCGACTCTACTACAGCAGCTCTGTGCACTACCATTCCAGTACTTCAGCGATCccagACTAAGGAACATTTTATTCCCGACACTCATTGCGTCGTGCTACGAGAATGACGAAAATAAAGCTATCATAGAACAAGAAGTAAGCTGTGCACTTCTAGAGAATTTCATCCAGtgtggaccggccgtaagtatgataacagtgactggtagtgatgatgatgatggatggtgtggtagcgatgatgatgatgttggcaacaatgatgataatgGAGCTCCTATACACCCCGAGAAACCTCAAACATGTAACAAAAATGCATTTGAGATTCATATCATCGTTTAG

Transcript

alvinactis_v1_g3088

Protein

Uniprot

Uniprot term	Description
Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens OX=9606 GN=SCAPER PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF16501	SCAPER_N	S phase cyclin A-associated protein in the endoplasmic reticulum	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR032446	Domain	S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31434	S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24869	SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum	-	Cilium and associated proteins	ko03037	deepkoala