Gene detail

Detailed information of alvinactis_v1_g31257 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:10350532...10418591
NR annotation: XP_031566606.1, exportin-T-like isoform X2 [Actinia tenebrosa]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g31257

ATGGTTGATGTCCTGAGGGAAAGTGTTTGTGATTGTTTCCATGAGATCATTAACAAAGGGATGGATCCTGTGGCCAAAACCGAGTTGGTGGAGTCGCTTGTCAGAGTCCTTGAAAATGCTGGGGTGCTCACTCCATCAGAGGATCTTGATAATGATTTCCTGGCCAAGTTAGCAAAGCTAGTAAACTGTATTGGAACCCAGTTAGTTACCAGTTATAACAAGTTATTGAAGTCCAATGATGCATCCACAGCATCAAAAACACTTCTTGCCATTGAAAGTAAACTGCAGCTGCTTTATAGGTTTCTTGGCGATGAGGATGATGATATATCGCATACTGTCCATGGCTTTGCTTATGCTTACTTGACATTGTTGAAGCAGGCTTCAATTACAATGAATTCACAACAAAAACAAAATATAGAGGGTATCCTGTACATTGTGATAAAAAAGATGAAGTATGATGACTCGTATAACTTTGCACACGAGGACGAAGATGAAGTCATGTTTATGGAGTTTAGGAAAGAAATGAAAGTTCTATTTGATAATATTGCACAACTGGATCATAATCTTGTTCTTGTTACAGTCAACAATGTCTTGAATTCAACTTTAGGGAGATTGCAAGAACTAGACTTCATGGATGTAGAAATAGCTGTACGTCTGGTGTTCATGCTGGGAGAAGCCATTCCTGCCCAGCAGTTATATTCTGATTCATCAAGGTTTAGTGCCCTACAGCAGATGATGACTACActtgtctcaagtcgtgtctcatattatggacattcagcagtatctatgatgTATTTTGAGTCTGTGGTTAGATATGAAAGGGTGTTTAGTGCTAATCCCGAGCATATCCCAGCAGTACTGATAGCATTTCTTGATGAGAGAGGGCTACGCAACCCTAACTGTATGGTTAGAAGCCGCTGTTGCTATCTTCTCTCAAGATTCATCAAAGCACACAAGAATCACATGCATAACTACGTTGATGATGTTCTTAAAAGATTACAGACTCTTCTTATTACGTCTGCTGATAATGGATACCAGCATCTTTCTGCTGACGAACAGTTGTTTTTGTATGAATGTGCTGGGATGCTAATCGCCTGCAGTGGTTCATCTCCAGAGAATAAGTTGGCATATATGAACACTCTTCTGTCTCCTGTCATTGCAAAGTTCAACATGGCTTTGTCCAAGCTCATGTCAGAGATAGATGGACCATCATCTGCTCCACTAGCTCAGTTGCTCTATAACTTAGTCTCCTTTGCCAGTCGTACAAGCAAAGCCTTCCCCAATCAACAATCACTGCGACAAAGTGGGTGTGCACCTTGCTTTGAAGAAGCTTTGCCAGTATTTCTACGAGCACTAACTGTGCCGATACATCGTGATATCATTCACAATGGAGTACGGCAGTATCTTCATAGAATGGTAATTTGTTTGGGACAAGACGTCTTGCAGTTTGTCCCAATTGCCGTAACTCACCTATTAAAAGATTGCACAGCTCGTGACATTCAAGATTTTATTCCATTAATTAACCAAATTATTGGAAAATTTAAGCATCATATTGTTCCATTCCTGTGTGATGTGTTCATGGCAAtagtcaataccatatttactgtacttagtaaaccagtggatcaagcagatacacagGCAACAAAAGAAAAAGAATCGTTGAGGAGAAGTTATTTTCTATTTATCGCAACCATTGTCAACAATGATGTGTCTGAAATACTTACTAGGCAAGAGCCCCAGAATGTACAACAGGTTCTTCTTACTATAATCCAAGGAGCAGTAGAATACCCTGACCCTGTGGCTCAGAAGATATGTTTTAGTGTCTTACGTAAGCTTGTGGAGCTTTGGGGTGGTAACAATGGTGAAAATGGTTTTAAAGACTTCATGTACGACAGCATTGTTCCTGCTTGTTTCCTTGCTCCAATGAAGTCCACATTTGACATGGAGGATGCCCAGACTTTCTTGGCAATGCAAGAAATAGCCCAAACACAAAAAACAATATTCCAAAAACAGGGTGGAGAGTTTCTAAATTACTTACAAGTGAAATACCTACCAAGTCTTAATTTGGCACCATCACTGGTTCAGGAATACACACAAGCTCTTCAGCATGCAGATATGAAAACATTCAAGAGTTATTCCAAGGTAAGTGTCATTGATTTCATGGGCTGGCATCTTGTGACAGTCCTCATCAAATACATGGTACATCATATCACTCATGACTATAATTTCTCCATTCTACATAAAACATCTAAGAAAAAAAACACCAGTGAACAAATGATGAGATTAAGAGGAATGGAAATCCGGAGTAGCCCGAACTATATCTGGAACTTAAAAGATGTCCTTGGTCAAGGGGCAACAGGAGCGGTGTATAAAGGCAGAGATAAGAAAACAGGCAATGAAGTAGCTATCAAAGCCACGAACCATCTTGGAATGATGAGACCACTAGACGTGAGGAAGCGAGAGTTTGAGGTCTTGAATCGCTTGGACCATAAGAATATCGTCAAGATATTTGCTTCAGAAAATGAGTTACGAAGCCAAAACGAGATCATCGTTATGGAGTTGTGTACTGGTGGGAGTCTGTACACGTTGCTGGAACATCCTGCCAATGCCTATGGCTTTTCTGAAAAAGACTGCAAAGACATCATCAGAGATGTTGTTGCAGGTATGGAACACTTAAGGGAGCAGGGAATCGTGCACCGTGACTTAAAACCAGGCAACATCATGCGAGCATTCAATCAAGATGGAACGTGTAATTACAAGCTGACTGATTTTGGAGCTGCTAGAGAGCTGGAGCATTCTGCAGAGCAATTTGTATCAGTGTATGGCACTGAAGAGTACTTGCATCCAGATCTTTATGAAAGAGGAGTTTTACGAAAATCCTCTGGGAAAACGTTTGGTGCAAATGTTGACCTTTGGAGTATAGGAGTAACGTTCTATCACATAGCAACTGGCAAGCTGCCATTTCGACCTCATGGTGGCAGACAAAACAAAGACACAATGTATCACATCACCACTGCTAAGAAGTCGGGTATGATCTCTGGAATACAGAGAAGTGGTGGAGGAGACATCGAGTGGAGTGATAAACTGCCAGATCACACTCAACTGTCCCGAGGATTTCAAGATCTTCTGGCTCCAATCCTGGCAGGAGTTCTGGAATCAGATCATTCAAAAATTATATCATTTGGTGAATTCTTTGGACGAATACAAGACATGATGACAAGGAAGGTGATCGAAGTCTATCATGTCCAGTCAAGTTCTTTTCATAAAATCTACATCTTACCAAAAGCCAAATTCCAAAAGTTTCAAGAACTTCTTTCAGAAGAGACAAGATTACCACCAGAACACCAAAAGCTGTACATCAATGGAGAATTATTCAAACCATCTCACACATTCGTTGCAAGCATGTTCCCTCCGACAACCAGATCACATCCTATGGTACTGATTGGAGGCGAGTTTGTTTTGCCTAAAGCATTGACGATAAGGAAGATTCCAAGCGTAACCAAACTACCTGATGAGTGGACTTTAGAGGCCGATACAGCAGCAGCAAAGATTATGGCCAACTGTGCTTATTCGTGCAAGATTTCAACACAGTACTACACTGATGTCATTAACGCCATGTGTTTGTCTATAGATGCTGTCATTAAGTCGTTTAAAACCGAGCTCCTCGAGACCGCGGTGGATTGTGGGAAAGTTGAAAGCATAAGGATTACTGCTAGTCACATGACTAAAGTATGCTGTAACAATCAAGAACACTTCATCTCATTGCTAGAAGGTCTGATGTCCCACgtgcagctttctgatgGCGAGAAATCCTCCATCGCAGACGAACTGGCCGTCATCAAACAATTGATACAAAACAAGAGGCAAAGTAATGAAGAGCTTGATCAAGTCAAGGATTTCACGGACAAACTTAACGTGCTCAAGAGTGATGTGGTGGATAACGATGTTTGGTCTTCATTCTACTTCAACTTCAGTCAACGCGCATGCGAGAAATCACTATATCCATTGGTGTCCAATATCACAACGAAGATCGAAGATATCTACAACCGATACAGGAAGGACAAACACATGCGACGACTTTCATTTCCTGACGAACAGAATCATATCTACGACAGAAAGAGGCTCGCTATGTTATCGAGCAAAGTTGTTCGTACAACAAAGGAATGCTTCGACCATCGAGGGTCGCTCTACCGAGAGTTTGTAGAATGGTTCAATGAAGTACATCTGTATCAGAACGAGGCTAGTCGACTAAAGGTTCAACTAACACAAATGGCGCCTGCCGACCAAGCTCATCTGATTGCATTGGAAACGTTCCAAGGAGAATGTCAAGAGAGATACCAGTTTATCCTGGACAAACTAAGACAAGCCATGACCACTTCGCCATCGACATCAGTGGGCACCGACACCCCGTCGCTGCTAGGTCCTTCCTTGAATGGAGTCGAAGATGTCCTGATGTCTGAGCACTTCTTTAGAGAAATGGAGACACAAATGGCGTTTATGTGTAACACCTCAGAGATATCCAACAAAACAGCACGTGATAATACACATCAACTAAAACAGCTGACAGCTTCTTTCACTGAATTTTACGAGCTGCTGCACGAGAGCGGTACCAAGACACTGAACGACTTACGGTTATTACAAGACAATCAATTGCCTGACGGCGATAACACAGGAATCCCGCTACAATAA

Transcript

alvinactis_v1_g31257

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43592	Exportin-T OS=Homo sapiens OX=9606 GN=XPOT PE=1 SV=2
Q5RA02	Exportin-T OS=Pongo abelii OX=9601 GN=XPOT PE=2 SV=1
Q9CRT8	Exportin-T OS=Mus musculus OX=10090 GN=Xpot PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002508 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF18394 all species →	TBK1_CCD1	TANK-binding kinase 1 coiled-coil domain 1	Coiled-coil	Interproscan
PF19282 all species →	Exportin-T	Exportin-T	Family	Interproscan
PF18396 all species →	TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR041309 all species →	Domain	TANK-binding kinase 1, coiled-coil domain 1	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR040017 all species →	Family	Exportin-T	Interproscan
IPR045546 all species →	Domain	Exportin-T, C-terminal domain	Interproscan
IPR041087 all species →	Domain	TANK binding kinase 1, ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15952 all species →	EXPORTIN-T/LOS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0016363 all species →	Cellular Component	nuclear matrix	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0071528 all species →	Biological Process	tRNA re-export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g31257.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →