Gene detail

Detailed information of alvinactis_v1_g31595 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:16149830...16151944
NR annotation: XP_028519517.1, uncharacterized protein LOC114576653 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g31595

atgagggataatgaggatattgaggattattttaggattttcgagatgacggcaagggctcagcttatacctgaaagggagtggttgggtagtttggtccccaaggttagcgaaaaggcaaaagccatttatctagatattccggaggataaagcacaggattttaaggcttctaaggaaataattttccaggcatatcaacatactgtagactattatacatgtaggtacaaattcaggaattcagaaaaagagccagatgaagattttgtgcagtgggttcacaggtctcgtaggtatttagacaggtggatgagagtagcaaaagcagaaggtagtgaagagcgaatcaaagaacagtttatgatagaaaaaatgttagattcagtttcacctgaactgcgctcttggttgatagagaagaaaccacagacttctggagaacttgccacgattgccaacgaccatatacaagcaaagaaaggcccaattatcgatggaaagtatgttggttatgggaaaaaaacaattcaagccataatcaagccaactgctacagtatcaacagaagagcaaagcactacacaacctaaaccaccacctgcagtgagttatcagtcacgcagagggagagacaataattcacaacctcgatgctttgtatgtgggaaaattggtcatctgtcctatgactgcagagagggaaagaggaatCCAGGTGGAACAGGTCTGTTGTGCATGACTCCACTTGATTCTGAGCGAGAAGCTGAGTTGCAACTGCactatatttctggttgcatttctggaaaaacagttaacatgttggtggactcgggttgcacaagaacactgattcaccagatctttgcttcaaatgtcaaaaagccaggcgagtacatttctgtacttacagctaatgtggatgtgttacttggacgctcgtcttatggtcagacgctgacgcaaaaagtagttctggaacagctgacgcaaaaagtagttctggaacagtgggaaaaagatgtacaagcaaaaggaatcaatgataatggtaaccaggcgtttgtgctcactcgaaaccaagttgctttacaaaaggcacaagaaaagagagatgagcttattgatcgtgaaaacaaagttgcggtaaaaagcttggcaTCTACGAAACTACACAACAAAGATGGCCCTGCATATGAAGTAAGTTTAAAACATTTATTGGGTGACGGGAATGGTAGTGATGTGGAAACGGAACTGCAGGAACAGTTACACAATGAAAAGTGTGATGATggcaaaaacatcttagatcgaaatcgagagcaattgatagcagaccagaaatctgacgtaacattaaaagcaacttatgaaaacgttttggataaaccagattcagatagctattatttgaaaaaaggaattcttatgcataggaaatgtaacaacgatgatcatgatggtttgaattataatgatcgtattgtagtaccagaattttacaggcaggaaattctacgtgtgggtcacgcaactccacttgctggacacatgggacaagaaaagacacattcaagaattgctgttcacttctattggcccaagctacacttcgatgtgaagaagtattgcgccacatgccctgagtgccaactggtaagtagaagaaatgtcgcaagtcgtgcacctctgagaccagttccagttgtcagcgaaccattcaggaagatcgccattgatattattggagagttgccgagaagtaagtcgggttgtaagtacacccttaccattgttgactacgcaacacgatacccagaggctatacccttgaagaatataagctcaaaaactgttgcggatgctcttattctatgttttacacgactaggaatacctgaacagttagtttctgatcaaggatctaactttattggcaagcttatgacccaattatatgaccagttagggataacaaagatacaaacctccgtttatcaccctgagCAGTTTATGAACATATGA

Transcript

alvinactis_v1_g31595

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR003309	Domain	SCAN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan