Gene detail

Detailed information of alvinactis_v1_g3225 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:6883379...6902561
NR annotation: XP_029194848.2, uncharacterized protein LOC114960596 [Acropora millepora]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g3225

ATGACTGGCTACAACAAGCAAGAAAGGCCAGTCATCAATGATTCAAATGCGGTCACGGTGGTCCTGGGCATGACTCTGAATCAGATCATCGATGTGGATGAAAAGAATCAAATCCTGACTACAAGTGCCTGGGTGAGGCAGACGTGGTTCAACCCTCACCTTTCTTGGAATGTTACTGAGTTTGGAGGTTTGAAGACTATTAATGTCTCCCCCAAAAAAGTATGGCTACCAGACATCGTCCTGTATGACAAtgcTGACGAGGACCTGTCATTCAGCGGGAATCTCGACCGACTTAACACTCGTGTTATATTATTTCACAACGGCCGCAACCAATGGCTTGCTCCTGTGACGTTTAAGAGTAATTGCCCAATCAACGTCAAGGATTTTCCATTTGACACTCAGTATTGTACGATGAAGTTTGGTTCATGGACTTACGATGGTTTCAGAATCGACCtggtcaacgagagtagctttgCTGATCTTGGTAACTATCTTCCAAGTTCTGAGTGGACCCTCGTGTCCGTCCCTGCAAAGCGGAACGTGGTCAAATATTTTTGCTGCGACGAGCCATACCCGGATGTGACGTTCACCTTTATCATAAGTAGGCGATCTTTGTTTTATATGATGAACCTGATACTACCGCTGGTCACAATTACTGTCTTGGTGAACGCCTCATTTGTTTTACCGGCTGAATCAGGTGAACGAATTTCTTTAGCTATGACAATTCTGCTGGCAATGACGGTATTCATGCTCGTGGTCGCCGAGACGATTCCTCCAACATCGGACGCAATTCCCCTCATAGCTAAATTCTACATGGCGGGAATGATAGAAATGGCAATAGCCCTCGTATGGACGTGTTACATCTTGAAATACTATCACTCAGATTGCATGGAGATGCCCAGTTGGGTGCGCAAGTATATACTCGGCTATCTTGGCAACTTCTTTGGAATTCGCATGGAGAATCTTAAACGTTTCTCAGAGCATTCCAACATAAGACGGATGAACTCCAGTGCGGCGCCGGACGAGACGACAATGGTGTTTCATCATGCGGCGGATGCTCCAGTGACTAGAAACCCCATGTGCAGGAAGCATTACAAAAATAAACTACTTTCAAAGACGGAGGAAAATATGGAGAACGACGACCCGTATGATCGTTCGCGGAATGGTTATTTGCCAACTCCTCTTCAACATCTTTCGACTACAAATTTGAGTTCCATCCCCGTCGACTCGTTAAACAGGCCGTTGTATGATCTTGGGGAGAAAATCTTGACGAATGTCCAAACTTTGGTCGAGAATTCAGTGGTGGACGATCGGGTTAATATTCACAAAGAAGAATGGCGTATCGCTGCCATGGTGATGGATAAGGTTTCTCTATGGGTGTTCAGTATCACCATCCTGGTGACCATCTTGGGGACGTTCCTACAGGCTCCAGGtgaattatttgaacttgtaccagttgagttttataattctgtaaaaaatgttgaggataaatcatgtaagagaaaaaggtcagacgagactgaaaatcaaaagcagaaaaggcttgaaaaagctagagagtataagaaaagaaaactttcagaggaaactgaaactgaaaaacaaaccaggttagaagcaaaaaaagcatatcaaaagaaaacaatttcagaggaaactgaaactgaaaaacaaaccaggttagaagcaataaaagcatataaaaagaaaacaatttcagaggaaactgaaactgaaaaacaaaccaggttagaagtgcaaaaagcatataaaaaggaaaagatttcaaaggaaactgaaacagaaagaaaaaccaggttagaagcaaaaaaagcatataaaaaggaaaagatttcaaaggaaactgaaactgaaagacaaaccaggttagaaaggaaaaaaatctgccgtaagacaaaaatctcacaacaaactgaaattgaaaaacaagtacggctagacaaaaataacaactgcaaaaaaagaaaatattcagaggaaagaaagactagacttgaaaaatctagagaagaaataattatttctcaacaatgccatttgagtgaatttgatacttttaaacatggcaaactccatgaacaaacttgggcaaagtccaacatttcaaaatttcacaactctattgtgtatgttgtgtgccaatgtactgtgtgtcatgaagcatggccattaaaatctaaaccaaggtcaccagacacttatgtatgtttaaggtgttcaagggataagaaaacccctaagaagttttcagttcaaaattcaatgattccatctccagtcccacctgaactacagggtttgtctcaagttgaagaaatgttaatcgctcgtgctctccctatcatgagagtttatattaaacctggtggtcagagagggtactctggacattgtatcaatttaccacaaaatgtgaaagagcttgcatcttcgttgccaaggtatcctaaggacctatctgtgattattgtgaaggtcaaaggtagagacaatacttttaaagatgttaaagtacaaagacaaaaagtgcatgatgccttattgtggctcacacaaaataatccccactatatagatgtacaaataaatgaacaagcattgaatgatttgcctgtcaatgatgtaccagtagatctgttgactgttgagacagaagatgatatcttagacgagactgttgagcctgatctaggtccacctactgataattctactgaagacacagtttacaatgaatctactgatatgagtagtttcttgcctgttggtgaacaccagcaacaagagcttgatgctgttagaagtcagctttcagcagatgatccaatatcatggccctcggttgaggatcagccattaaatgaatatcaaacgtcatgtctagctactatggcttttcctacactattccccgatggtaaaggggatccaactaatcaagcattattaagagatgtaccccttccagaaagaattaagcaccttataaagtttgctgaaaaatcagatggaaagtggatataccgctttgctagccatcccagatttgcatactgggcttttaacatgattcagcgaaaaagaacactacaacaaactgggatatttttaaaacaaaatcctggtgaagcacatctaaccattgatgagttgcgtgaaatggctgcaagtaataattcagctgcattaatgtctaaaatatctaggtatgttgctaatattgctggcacaaatgcttactggcataaggtcaaagaagacctcaaagccatagtaacaaatgttggtacacccacattcttttttaccttttcatcagctgatatgcattggcctgaattacatgctctctttgaagagaacaataatggtgatataagcactactagcgaagagagacgtcagaatgttatcaacaatccccatgttgtggattggtttttcactcaaaaactagagagttttgtaaaacactggctttgtgatactcttgatgccaaatggcattggtatagatttgaataccaagctcagaagtataaagatgagcatgatgttgaagatacatcagagttagaccaggatattgaagctggtaataaagctgctaacacagcctgtcagtatgttgattggttattatcaactgtaaacccaaacccaccagatgaagacatgtggattagaccacaagtacatccatgtcagaaacattacaaagacatccctgattgggatgtagattctgattatgcagatcttttaaacatggttcaacggcatactcgctgtagtactagctattgcctgagaaagaaacataatgaatctgacttgacatgcagatttcattttccatttgatcactgttcacagacaaaactagaatttgaaaaacttcatagtaagaatgatgaagtacaatatagagcaaagattgttactaagagaaatgactctaagttaaataataaccaacagcttcaactacaaggctggagagccaactgtgatatacaagtagtcattgatcactatgcttgtgttgaatatcttactaatgatccacacaaggctataaagaaggtagttatgaaaacccttggtgaaagagattatgctgcacaagagacaatgcatcacttactgtcacttaaactacatagttcatcatttaatgttattcctgtcagtcttaatggctcacgtcgagtaaacactcatatatcagaagacaatggtgatacctgtaccaacaattcactacttgatgtttacgccaaccatgaacagtatgatagttcacctaatattgtgaatttgaattttgttaagtttgcaacgaaatttaaagttgtcaatagaaaattaacagagctgccagctaatgtaattccaaggatatttccaacctactcgcctaatcccaaagggccaaattttatgctctattgtaaataccaacttttgaggtataaaccctggaaaataactcaagataatgcatggggtgatcaggaaccttctgatgaagtctttgttacttgctggcatgaatttttgcaaacaccatatgcagaggccaatgtacctgactggtttgataaacttcaaaatgttattcaaaatcaagaagaaccagacagtgaacctgttgagtcagagagtactaacacacgtgaagaatggatgataatatcagaccttcacacgccatttgaaaattccgatcaaagttcaatgtcaacacatgattggcaccaagacagagtcagatacactgaccaagaaattggtgaaatgcctacatggattaaaaccaaaagagagcaagctaatggtatcactcatcaagactatcaagttgtagatatcaatagttttagtgaaatgcaaaaacttgcatataatattgtgaataatcactcgcatgatacatctgttgagaaagacactctatgtcttattgtcataggagtagctggtacaggcaaaagctacctcattaatgctttacgcaacctcttacaaaatagatgtgcagtttctgccacaacaggtaaagcatcttataatatcaaaggtgttacaattcattctttgctgaaattaccagtgggaccaagaggtaacaaagatcttacaggtcaaaccttatgtagactacaagagagtctcaatggtatagaatatattctcatagatgaatattcaatgcttggccaaaccacatttggatggatagataagcgttgcaagcaagcaacaggatgctatgacaaagttcttggaggaaaatccttgatattgattggtgatccaggtcagttaccacctgtagcagataaagcactctatcatgctaaaccgtcaaatgctattggagaacaaggttatcagacatacagaatgtttgacaaagtggttaagcttactgttaatcaaagagttcagggtatgtctacagaacaagaacagttcagaaatttgcttttaaggctgcgaaaaggtgattcaacacatgaagactggcagttgttgttgactcgtcaaccatctaatattgtagatttgtctcaatttgatgatgcaactagactgttttacagcaatgatgaagttggaacatataatcatgaacaactcaccagactacaacaacctgttgctaatatcaatgcacgtcattcatctgctatggcaaaaaagatgacttctgaggacatgtcaggtctagagccaacaattttcctagcaaagggtaccaaagtaatgctgacaatgaatctctgggcaagtgttggtctatgtaatggagccactggaacaatccttgactttatctatgagagtaatcaccaaccacctgatctacctatagctgtgattgttcactttgatgactacagaggtccttctatcagtgatacattaccatgctgtgtaccaatatgtccagttactgtctcagctcagtcatcagatggctttcatgaaaggcagcaggtacctctaagacttgcctatgctcttactatccacaagagtcaaggtctaactatgtctaaagcctggatagacattggtaaatcagagagaactcctggcgtgtcctatgttgctattagtagagtcaaaacactctcatcttgtgttattgaaccaatgacatttgaaaggttgaccagtttgaaatcttctacaactttacagtacagactagatgaagaagctagactagataacacagcacaagcaacgttcaatgtcatcttgctcttatggaagaaacgagacaaacgctgtgtcaacttttattcttcaaaggatgaacgattgcaagaagacttgttatgtgcaaattcactagatgtcatcttgctcttatggaagaaacgagacaaacgctgtgtcaacttttattcttcaaaggatgaacgattgcaagaagacttgttatgtgcaaattcactagatgtcatcttgctcttatggaagaaacgagacaaacgctgtgtcaacttttgtacttcaaaggatgaacgattgcaagaagacttgttatgtgcaaattcactagatgtcatcttgctcttatggaagaaacgagacaaacgctgtgtcaacttttgttcttcaagggatgaacgattgcaagacgaagacttgttatgtgcaaattcactggatgtcatcttgctcttatggaagaaacgagacaaacgctgtgtcaacttttgttcttcaagggttgaacgaaatctcgcaatctga

Transcript

alvinactis_v1_g3225

Protein

alvinactis_v1_g3225

MTGYNKQERPVINDSNAVTVVLGMTLNQIIDVDEKNQILTTSAWVRQTWFNPHLSWNVTEFGGLKTINVSPKKVWLPDIVLYDNADEDLSFSGNLDRLNTRVILFHNGRNQWLAPVTFKSNCPINVKDFPFDTQYCTMKFGSWTYDGFRIDLVNESSFADLGNYLPSSEWTLVSVPAKRNVVKYFCCDEPYPDVTFTFIISRRSLFYMMNLILPLVTITVLVNASFVLPAESGERISLAMTILLAMTVFMLVVAETIPPTSDAIPLIAKFYMAGMIEMAIALVWTCYILKYYHSDCMEMPSWVRKYILGYLGNFFGIRMENLKRFSEHSNIRRMNSSAAPDETTMVFHHAADAPVTRNPMCRKHYKNKLLSKTEENMENDDPYDRSRNGYLPTPLQHLSTTNLSSIPVDSLNRPLYDLGEKILTNVQTLVENSVVDDRVNIHKEEWRIAAMVMDKVSLWVFSITILVTILGTFLQAPGELFELVPVEFYNSVKNVEDKSCKRKRSDETENQKQKRLEKAREYKKRKLSEETETEKQTRLEAKKAYQKKTISEETETEKQTRLEAIKAYKKKTISEETETEKQTRLEVQKAYKKEKISKETETERKTRLEAKKAYKKEKISKETETERQTRLERKKICRKTKISQQTEIEKQVRLDKNNNCKKRKYSEERKTRLEKSREEIIISQQCHLSEFDTFKHGKLHEQTWAKSNISKFHNSIVYVVCQCTVCHEAWPLKSKPRSPDTYVCLRCSRDKKTPKKFSVQNSMIPSPVPPELQGLSQVEEMLIARALPIMRVYIKPGGQRGYSGHCINLPQNVKELASSLPRYPKDLSVIIVKVKGRDNTFKDVKVQRQKVHDALLWLTQNNPHYIDVQINEQALNDLPVNDVPVDLLTVETEDDILDETVEPDLGPPTDNSTEDTVYNESTDMSSFLPVGEHQQQELDAVRSQLSADDPISWPSVEDQPLNEYQTSCLATMAFPTLFPDGKGDPTNQALLRDVPLPERIKHLIKFAEKSDGKWIYRFASHPRFAYWAFNMIQRKRTLQQTGIFLKQNPGEAHLTIDELREMAASNNSAALMSKISRYVANIAGTNAYWHKVKEDLKAIVTNVGTPTFFFTFSSADMHWPELHALFEENNNGDISTTSEERRQNVINNPHVVDWFFTQKLESFVKHWLCDTLDAKWHWYRFEYQAQKYKDEHDVEDTSELDQDIEAGNKAANTACQYVDWLLSTVNPNPPDEDMWIRPQVHPCQKHYKDIPDWDVDSDYADLLNMVQRHTRCSTSYCLRKKHNESDLTCRFHFPFDHCSQTKLEFEKLHSKNDEVQYRAKIVTKRNDSKLNNNQQLQLQGWRANCDIQVVIDHYACVEYLTNDPHKAIKKVVMKTLGERDYAAQETMHHLLSLKLHSSSFNVIPVSLNGSRRVNTHISEDNGDTCTNNSLLDVYANHEQYDSSPNIVNLNFVKFATKFKVVNRKLTELPANVIPRIFPTYSPNPKGPNFMLYCKYQLLRYKPWKITQDNAWGDQEPSDEVFVTCWHEFLQTPYAEANVPDWFDKLQNVIQNQEEPDSEPVESESTNTREEWMIISDLHTPFENSDQSSMSTHDWHQDRVRYTDQEIGEMPTWIKTKREQANGITHQDYQVVDINSFSEMQKLAYNIVNNHSHDTSVEKDTLCLIVIGVAGTGKSYLINALRNLLQNRCAVSATTGKASYNIKGVTIHSLLKLPVGPRGNKDLTGQTLCRLQESLNGIEYILIDEYSMLGQTTFGWIDKRCKQATGCYDKVLGGKSLILIGDPGQLPPVADKALYHAKPSNAIGEQGYQTYRMFDKVVKLTVNQRVQGMSTEQEQFRNLLLRLRKGDSTHEDWQLLLTRQPSNIVDLSQFDDATRLFYSNDEVGTYNHEQLTRLQQPVANINARHSSAMAKKMTSEDMSGLEPTIFLAKGTKVMLTMNLWASVGLCNGATGTILDFIYESNHQPPDLPIAVIVHFDDYRGPSISDTLPCCVPICPVTVSAQSSDGFHERQQVPLRLAYALTIHKSQGLTMSKAWIDIGKSERTPGVSYVAISRVKTLSSCVIEPMTFERLTSLKSSTTLQYRLDEEARLDNTAQATFNVILLLWKKRDKRCVNFYSSKDERLQEDLLCANSLDVILLLWKKRDKRCVNFYSSKDERLQEDLLCANSLDVILLLWKKRDKRCVNFCTSKDERLQEDLLCANSLDVILLLWKKRDKRCVNFCSSRDERLQDEDLLCANSLDVILLLWKKRDKRCVNFCSSRVERNLAI*

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q866A2	Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta OX=9544 GN=CHRNA7 PE=2 SV=1
P36544	Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens OX=9606 GN=CHRNA7 PE=1 SV=5
P54131	Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus OX=9913 GN=CHRNA7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000102 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14214 all species →	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF20209 all species →	DUF6570	Domain of unknown function (DUF6570)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002394 all species →	Family	Nicotinic acetylcholine receptor	Interproscan
IPR025476 all species →	Domain	Helitron helicase-like domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan
IPR046700 all species →	Domain	Domain of unknown function DUF6570	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022848 all species →	Molecular Function	acetylcholine-gated monoatomic cation-selective channel activity	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g3225.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →