Gene detail

Detailed information of alvinactis_v1_g342 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:6336768...6357482
NR annotation: XP_020894229.1, WW domain-containing adapter protein with coiled-coil [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g342

ATGGGTAGTGGTTCCAACGCTAAGAGGCAATGCCAAGGCAATGTACAGGGTGACCAGCAGAGCGATGCTGACAGCTCACAGAAACAACGCAGAAAAAGAACTAAGAACCTAGAATTACAGCTTAAAGAACAGATTGAATTTTACTTCAGTGACTCAAATTTACAAAAGGACAGATTTTTGAGGCAAGCGATACTTGAGAGCCCAGATGGATATGTAGACATAAAGACAATTGCCAATTTTAACCGAATGAAGCAGATGACAGATGACATTGAATTAGTGATTAAAGCAATGAAGTCATCAACACTTCTCCAGCTGGATGATGATGATACTATGGTCAAAAGAGTTGCTCCTTTACCAGAAGCAAGAAACGTGGATGCTGAAACCATTTATGTTGAAAATCTTCCACAAAACACTGACCACGACTGTTTAAGAAAGATATTTTCGCAGTTTGGAAAAGTCATGTATGTAAGCATACCTCGATTCAAACATACTGGGGATATCAAGGGATTTGCTTTCATAGAGTTTGAGAGCTCAAATGAAGCAGGCAGTGCTGTTGAGACATTTCACAAGGAAACAGAAGAAAAAGAAAATGGCCAACAGGGAGACCAAAAGCCAAAACGGCGAAAGAGACCACACAGCGAGTCTGACGTAGACTGCCGTAAACAAAGTAGCAAGACTGACACTAGGACTGACAGAAAAAGACGGCGAACAACCAGCGAATCATCGGCTGATTCACAAGAAGGTAACTTGGACTCACCGAAGAAAAAACAGCACTTAGCTTTACCAGAATGTCAGCCTAAGATTGAAGAAGCTTCAAGTGAAGAAGAAGGAAAAGTCCGAAAACGTAAAAAGAACGACAAAAGCGTTCACTGGAAACATGAAGACGACGAAAGTCAAAGTGACGTAAAAGTAACGGAGCAAAAGATAAAAACAGAGGTGAAGAGTGAAGAAAATTCTAGTAAAAAACAGAAAAGTTCCGAATGCGATTCAAATGCTGAAAATGTCGAAAGTGaagacgaaagaacaaagaaaaagaaacgaaaacgcaaagcaaaagagaaaaaggaaGCAAAGTTACCGCATTTTCGCGTCATTCCAAAGCTTGAGTGGATGCGATTGAAGGGAGAATACAAAAAACTTCAAAGAGAATCCATGCAGGAACTAAAGAAACAGCTACAAGACAGTGCTGACCAAAAACAATCACATGACACTCAAGAAAACCAACCAAATCAGAGTGTGCAGATTAAGAAAGAAAACAAGGAGGAATGTGCTGTGAAGGAGCTGCCGTTCACGCCTGGCGTGGTGCTTTATTTCAAGTGTTTGGGTACTACAGACCTTCTCAAGTCAGACATTCGTGAGAGGATAATAACACACGCCCCTGTAGCTTACATTGACGTTAAAGAAGGAGATGCTGAGGGCTATTTGCGATTTCACACAGTAGATAACTGCTCAACGGTATTTGACAATATATCTGCAGACTCGTCGGCAGGACTGGAGCTTGATAAAGTAACAGGAGAACGAGAACGCGAATACTGGAGAAAGATTAACGCTGACAGAATGGCAAGGTTTCAGGCGAAACGAGAGAAAAAGCGAGGAACTGAAAAGTTGCACTTCGGTACCCTGCGAGCAGAGGTTTCCTGGAAAGGTACCATGAAAGGAGTCCGTATCACCCGTATCAGAACTACAGACTTTCATGATAAGGGTACTGGAATAAGTATATTTCCATTAGATCTAGCATTCATACCTAGTAAAGAAGGGAAGTCTAATAGATCAAGCCAATCTCCCAATGATGCTCACCATGAGTCTAATTCACATTCTGAACGACGTACAAAGTTCAACCATATTAGCACAAATGAGGAATTTCCCTGGTCTCAGCATGTCAGTTCATCAGGGAAGGTGTATTACTATAATTTCAAGACTGAAAAGTCCCAATGGGAGAAACCAAAAGAATGGATTGAAAGGGAGAGGAGAGACAAAGAGACCAAAGAAAGACTTCATGGTTTGGTTGGCTCTAAAGATAACAGAGACAAGGGATTCCATAAAGAAGATTCAAATTATGAAAAATCAAGAACTTATGTTTCCAAATACTCTGTTAAAGAATCATTGTCAAATGACAGAAGAGATGGTAATAGGGTACACAATGATGACAGGGGAAGAGAGAACCACCACATTGCTGATTCTGACCGAGGACAGACAGTCATCAAGACAGTATCAGCGCATACTAGTGCACAATCTACTACATCTCATAGATCAACTACTGTGGCAGCAACTATGTCAGGAAATTCTATTGTGTCTCCAGCTGGAAGTCTTCAAGATGTATCTCCTCCCTCTACTCCATCTTCACGGGCAAGCATATTTGAGTGTGGCTCACACACTTCATCACCACAGTTAGTTTCTGTTTCACCTCTTGGCACACCGTATCAAAGTACACAGTCTCCACTAGGACAATCTAGACATGGGGTGTTACTAACTGTATTCCCACAAGTTTCCACAGCTTCTTCTATAAATCAGCAACACTATGCAAAGCACAGCATGCTGCAGCACAACTCTGCACAATATGGACTTGTAAATAATGGTAATACTCAAAATATTGCGGCAGCATTTCCTTCCAGTCAGACATTGGATGGTGAGACTAATTCACGGCCTGCACTGCACCCACTACAACAGGCTACTCTACTGCATCAAAGAAAACTGTCTGAGAGTCGAAACCATGCCATAAGCAATTATCAGCAATCTTTCCCTGTTATGACACAACATGCAGTGCAACAGTCTCCAGTAGCAGCTGCTCTACTCAAAGAAAACAACCGAATTCATCAGTCCCCTGGATCTCCTATAATATTTACACCAAACCTTGCATCAAACAGCCCAAGTACAAAAGAACAATTCCAGTGTGTAACCCATGTACAAACCTCCTTAGGTTCAACTCGGAGTCCAATGCAGTTGTCTCCTTCATCAATCAGTCCCATACCAGTACAACCTTTACCTGTTGTCAATCTTCAAGCACTTGTTAAATACATAGACAAAAGTCTTACAAGTCATACCAGTAACTGGCCAACTGAAGGTCTAGATAAACAGGTACAAAGACTAAATGATGAGGGCTGTTGTAGTGCTAGTGATGCCAGTAAGATTCAAATACAGCAACTTCATCTTCAATCACAGCTAGATTTGTTAGATATGAGACTTAATGTTGGATCCAAAAGGATAACATCCATGAAGGAAGTTACAAAGATCCTTGAACAGTTATTAGCGGAGTCTGATAAAAAGTCACTAACATAA

Transcript

alvinactis_v1_g342

Protein

Uniprot

Uniprot term	Description
Q7ZWE3	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1
Q4G0J3	La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1
Q4R627	La-related protein 7 OS=Macaca fascicularis OX=9541 GN=LARP7 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08777	RRM_3	RNA binding motif	Domain	Interproscan
PF00397	WW	WW domain	Domain	Interproscan
PF05383	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR006630	Domain	La-type HTH domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR002344	Family	Lupus La protein	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR045180	Family	La domain containing protein	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR034887	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan