Genomic Location: chr_2:35127576...35139787
NR annotation: XP_020911323.1, cytochrome b-245 heavy chain isoform X2 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g5042 |
| Transcript |
| alvinactis_v1_g5042 |
| Protein |
| alvinactis_v1_g5042 |
| UniProt accession | Description |
|---|---|
| Q95L74 | NADPH oxidase 2 OS=Bison bison OX=9901 GN=CYBB PE=2 SV=1 |
| O46522 | NADPH oxidase 2 OS=Bos taurus OX=9913 GN=CYBB PE=2 SV=1 |
| P52649 | NADPH oxidase 2 OS=Sus scrofa OX=9823 GN=CYBB PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000999 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08030 all species → | NAD_binding_6 | Ferric reductase NAD binding domain | Domain | Interproscan |
| PF01794 all species → | Ferric_reduct | Ferric reductase like transmembrane component | Family | Interproscan |
| PF08022 all species → | FAD_binding_8 | FAD-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013121 all species → | Domain | Ferric reductase, NAD binding domain | Interproscan |
| IPR013130 all species → | Domain | Ferric reductase transmembrane component-like domain | Interproscan |
| IPR039261 all species → | Homologous_superfamily | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Interproscan |
| IPR050369 all species → | Family | Respiratory burst oxidase/Ferric reductase | Interproscan |
| IPR017927 all species → | Domain | FAD-binding domain, ferredoxin reductase-type | Interproscan |
| IPR000778 all species → | Family | Cytochrome b245, heavy chain | Interproscan |
| IPR017938 all species → | Homologous_superfamily | Riboflavin synthase-like beta-barrel | Interproscan |
| IPR013112 all species → | Domain | FAD-binding 8 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11972 all species → | NADPH OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006952 all species → | Biological Process | defense response | Interproscan |
| GO:0016175 all species → | Molecular Function | superoxide-generating NAD(P)H oxidase activity | Interproscan |
| GO:0042554 all species → | Biological Process | superoxide anion generation | Interproscan |
| GO:0043020 all species → | Cellular Component | NADPH oxidase complex | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21421 | NOX2, GP91, CYBB; NADPH oxidase 2 | EC:1.-.-.- | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
