Gene detail

Detailed information of alvinactis_v1_g5233 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:37974727...38010241
NR annotation: XP_028514817.1, translocation protein SEC63 homolog [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g5233

atgaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaaagaaagaattaattaagaaagaattaaagaaagaattaaagaaagaattaattaagaaagaattaaagaaagaattaaagaaagaattaaagaaagacttaaagaaagaattaaagaaagaattaaaggaagaattaaagaaagaattaaagaaagaaGGACAAAAAAAGAAAGGAAAtgctgcagctactgctgatggtggtgaagatggtgtttgttgttgttgtgatgatgatggtggtgataatgatgagggtcatgatagtggtgttgtgatgGAAATTGTCGGAGAAGATAAATTAAAAACATTGCTTAAAGAGCGCAACATCAGTCTTTACTGGGGCACAGCAACTACTGGCAAGCCTCATGTCGCATACTTTGTGCCGATGACAAAGATTGCAGACTTCCTCCATGCTGGTTGTGAGGTGACAATTTTGCTAGCTGATCTGCATGCATATCTGGATAATTTAAAAGCACCATGGGAATTGTTGGTCCACAGGGTCCAGTACTATGAAGAAGTTGTTAAGgcaatgctggaatcaatcaGTGTACCACTGGACAAACTAAAATTTGTCAAAGGAACTGAATATCAATTAAACAGGGACTACATTCTTGATATTTTCAAGCTTACTACAGTAGCAACTGAGCATGACTGTAAAAAAGCTGGTTCTGAAGTAGTGAAGCAAGTACAACATCCACTACTTAGTGGCCTCCTGTACCCAGGATTACAGGCATTGGATGAGGAGTACCTTAAAGTAGATGCTCAATTTGGTGGAGTTGATCAACGGAAAATCTTCATGTTTGCTGAAAAGTATCTTCCATCTTTAGGATATGCAAAGAGAATTCATCTCATGAATCCTATGGTGCCTGGTTTAACTGGAGGCAAAATGAGTGCATCAGATGAGGATTCTAAGATTGACTTACTGGACAGTGCTTCAGCTGTCAAGAAAAAAGTGAAAAAGGCCTTCTGTGAAGAAGGCAACGTTGCTGACAATGGAGTTCTTGCCTTCGCTAAGTTTGTTATCTTCCCGGTATTGGCAATCAAGGGTGTAAATGCATTTGTCGTTGAGCGGTCAGAGGAAAATGGTGGAAATCTAACTTTTTCAGATTATGAGTCTTTAAAAGATACATTTGCAAAGAAGGAAATTCACCCCTTAGATCTAAAAGATGCTGTCTGCAAAGTCCTAAACAGTCTGTTGGAACCAGTACGTCAGAAATTTGAAAAACCAGAGTTCAAGAAAATCAAGAACCTCGCTTACCCTGAACCAAAGAAAACAAAAACCAAAGGTGGTGGAGCCAGTAACACAGACAGAGCAGTAGATCCATCAAGACTTGATTTACGTATTGGAAAAGTTGTGTCGGCAAAGAAGCATCCTGATGCTGATGCACTGTACTTGGAAGAAATTGATGTTGGTGAAGAAAAACCAAGAACAGTAGTGAGTGGATTAGCAGCTTATCTTCCTCTAGAGGATTTACAGGACAGGATGGTCGTCATGCTATGTAATCTTAAACCTGTCAACATGAGAGGTATTAAATCAGAGGCGATGTTACTTGCAGCTTCAACTGGAGAAGGTGATCAACGAAAGGTGATCCCACTAAGTCCACCTGATGGCTGCAAACCAGGCGACAGAGTAATTGTTGAAGGGTATGACCACAAGGACCTTGGACAACCTGATGAACAACTCAACCCCAAGAAAAAGATATTTGATGCTCTCAAACCTGATTTACTTGTTTCCAGCGAAGGACAAGCAGAGTACAAAGGAAAGGACAAGAAGACGGACGTTAAGGACTGTCGATGTCCGCCATGCTTGGAGAAACATCATCGATTAAAGAAGTCACAACCTAAGTCAAGGACCATTCGCTATGCTGGTCTGTTTGGTCTGGTGATATTGTGGGCATTATTTATATATGGTGGTTATAAAATCTCGCAGTTTGAAAAAGATTTCATTGAGTACGACCCTTACCATGTACTAGAGATTGATAGGGGTGCATCAGTGGCAGAGATTCGTCGACAATACAGACGGTTGAGTATGAAGTACCATCCTGACAAAGAAACAGGAGATTCTAAGAAGTTTATGAGGATTGCCAAGGCCTATGAAGCCTTAACCAACGAAGAATCAAGAAAGAATTGGGAAGAGTATGGAAACCCAGATGGACCAGGAGCAACAAGTTTCGGCATTGCTTTACCGTCCTGGTTGGTTAGCAAAGAAAATTCTGTGTGGGTACTTGCAGCTTATGGTCTAGCCTTTATGGTAATCCTACCAGTTAGTGTGGGAACCTGGTGGTACAAGTCTATACAGTATAGTTGTGATCAAATTCTGCTGGACACGTCACAGTTGTATTACTACTTCTTTCACAAAACACCTGGAATGCAAATAAAAAGAATCCTAATGATCCTGGCTGGTTCTCTTGAGTTTGAAAAAGGTCACAACAACGAGGTGCAGGAACGAGAAACTGATAACACAGAAATACCAACGTTGATGAGGGATTTGCCAAACCTCGGTGACAAGAACAAAGAGCCCCCATTATGCTATCCCTACAGCATCAAGGCCAGATCTCTCATCCATGCGCATCTGTCAAGGATGGATCTTCCTCCAGACACACTGAAACATGACTTGAACTTAATCCTAGAGAAGAGCCCCATGCTTGTACAGGAGATGATCTCTTGTGTGTCTCAACTGATAGCAATGGCAAAGTCTGGCAGAACGGCCAACATGCCACGCCTTGAAACCGTAGAGAACTGTATGCGCATCAATCAGATGTTGGTACAAGGACTATGGGACACTAAGTCAACCCTTCTACAGCTGCCGCATATCAACACAGATAATTTAAGACATTTTACTACTAAAAAGAGAAATATACGTTCTATACGGCAGTTGGTGTCCATGAAAGAAGAAGACCGAAGGGCTCTCCTTAGAAACCTCAGTGATGAGGAATATTCCGATATTATCAATGTGATATGGAGTTATCCATTAGTAGAAATGACTGCTAGAGCTCATGTTCTTGATGATGCAGATGACAAGTCTCTAATTACTGTAGGGGATATTGTTACTGTTACCGTTAACCTGAAGAGACGTTCATTAGGGGAAACATTTGAAGAGGAAAGTACAGAAACACACAGTACTGATGTTAGTGAACAATCTGAAGCTAAGCCAGAACCAAAGGATTCACCTCAAGCACAAAAGGTTTGGCAGAAGAATAAAAAGAAGGGTAAAAAGCCCAAACaaaataaacaagtcaagaaaaaaacagtcaagCAACAACTGAAGAAGAAAGGCAGTGAAGACAAAGAAGAAAAAGatACTTCATCCAAAGAGAAGACTGAAGACGAAAACAAAAAAGAGAAAGAAGAAAAGGAAGAGAAGGGTGAAGACCATGATGGACAAGAAGCCAATGGTGGAGACAACGAAGAGAAAATTGACAGTGGATCAGAGAGTGGTGATGAACAATCCAGTGGAGAAGACAGTGACGACGAGTCTAATCAAGGGTCTGGGAAATCGCCTGAAGAGGACGAGGAGGAATGGCAACGACTCCAGGCTGATGTGAAAAATAAAGAAGTTATTTTAGAAACCAAATCAAAGGAAACGCATGACGTACATTCACCATTCTTCCCTGAGGAAAAGCAAGAGTGGTGGTGGATATACGTGACTGATAAACGAAGAACAGCTCTTATTACACCGCCGCATCAAGTAACGAGCTTAAAAGATGAAGAAGAGGTGGAACTCAAATTCCAAGCACCCACCAAAATCGGCTCATATCATTATACTGTTACATTAAGATCGGATTCTTACTTGGATTGTGACCAGCATCAAAACATAAAGATTACCGTCGAGGAAGCCCAAGAGTTCGAAACTAAACAATGGGACTTTGAGAGCGACGAAGAAGACAAAGATGATGACGGAGAATCGGGTGAAAGTGATTACGAAGAAGACGACGAATACAGTGACTAG

Transcript

alvinactis_v1_g5233

Protein

Uniprot

Uniprot term	Description
Q6TGS6	Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2
Q5ZJ08	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
Q29465	Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=YARS1 PE=2 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan
PF02889	Sec63	Sec63 Brl domain	Family	Interproscan
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF00226	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR004179	Domain	Sec63 domain	Interproscan
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002307	Family	Tyrosine-tRNA ligase	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0006620	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0008320	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0031207	Cellular Component	Sec62/Sec63 complex	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004831	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0006437	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09540	SEC63, DNAJC23; translocation protein SEC63	-	Secretion system	ko02044	deepkoala