Gene detail

Detailed information of alvinactis_v1_g5319 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:39234424...39236768
NR annotation: XP_020895689.1, uncharacterized protein LOC110234644 isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g5319

atgcatgaggaatcccttagcaatggcatgcaagaagatgatgctgttacagccctttttgaaatatctgaccaacgtgaagacagagccagcgcacttcaggtagcaaaggctcttgattttcagccactggcgcttgcatgcgctggagtgtacataagctgggtacgtctgagtttaaaacgctcgatgaaatggaaagaatatctcctaaagataccagaaggaaaacgaaaatcaatggaaagaccatttaagaaaacgagcagatcttatccagaaacaatgacgacagctgtcgagatggccgtggaaaaggttatgaaggaagacaaattcatgatgttcacatttcagttcttgtccgtcattgctcccgagcctattccaatggagtacgttgttcggtacgttttgaaatgcatgcctgacgaagatgaagacgaagatttcgtggccgctcacatcgcacgctcatcccttgttcttatatccgaagatgaaaCGAGTGAATCCACACAAATTCGATTGCACCAAATCGTACACACTGTACTTGTTGGAACAGCAAAGCAGGTTGTTGAAGGCGATTTCCTTTCTTTGGTGAACGTGACTGAATCGTTTTCATCCCTTAACATCAAAGATGACAAGGAACCGGATTATCAGTTTATTACTGAAACGCAAACTCTTGTTCCACACTTTCTTATTGTGACGGAGATAGTCCACAAACAGCTCAAGTTAATTGCAAGTTCAAAGACATTTTGTATTGATAAAGCTCTGTCCATGGCAAAATGTCTATCCTGCGCTGTAGGGACAGTTTGTAAGGCCCATGGACAACTGAATGCTGCAAAAACATGCTATGAACTTTCTCTCCTCATTAAAGAAAGCATGTGCGAAAAATCAGGCTTTGATTTGATAAAAGCAAAGAAATATTTAGAACAAGCACTTGCTGATGATGAACTTGTAAGAGATGAAAATGCTCCATCCTATGTGCGAACATTGAGTAACCTGGGAATGGTCCTTGCAGAACTTGGAAAATACGGAGAGGCTGAGGAATGCTTAGAGAAAATACTTGCCATGAAGAAGTGTATCGATGATGACACTCTTCCTTTTTTAGGAAGAATATTGAATTGCATTGGAATTATGCTTTCTGTACTGGGACGATATGAAGAATCTAAGGAATTTCTAGAGAAAGCAGTTGATGCTGATCAGCGTACTTATGGCGAAAATCACCCATATGTATCGGTTAGACTGAGCGACCTTGGATTAACCATGCGAGAACTTGGACAATACAGAGAAGCCAAGCATTACTTTGAAAGAGCACTCACAATTCACGAGAGTATATACGGTGAAGATAATAAATATCTGGTGATAAGACTGACCAACATGGGAGTGGTGCTTAAAGATATCGGGCACTATCAAGAATCCAAGAAATATCTAGAAAGAGCACTCGCCATTGACGAACGTACGTATGACAAACTTCATCCATCCTTGGCGGTCTCCTTAAATAACCTCGGAATGATTCTGAATGATCTTGGGGAATATGAAGAAGCCAAGAAATATCTAGAAAGAGCTCATGCTATTGCCAAAAGTAAATGCAAAGAAGATCATCCACTGTTTGTGGCATCAATGAATAACGTAGGATTGGTTCTCCACGGTCTGGGGAAATATGAAGAAGCCAAGAAAACTATGGAAAGTGCACTTGCAATTGTAGAAGGTACATCTGATGAAAACCATCCGTATTTGCCCAGAATACTGACTTATCTTGGAATGGTGCTGACAGATCTCAGGCAATATGAAACAGCGAACAAACATCTCAAAAGAGCACTTGCTATTACAGAAAGTCTATACAATGAAAACCATCTATCTTTGACCATGACACTGAATAATCTGGGAGTGGTGCTTAGATATCAGGGAGAATATgaagaagccaagacatatctggaaagagctcttgctattgaagaacatacatttgatgaaaaccatccatctttggcgaaaacgttgaataacctggccatggtgctgaaagatgttaaacaatatgacaaagccatagaatgtatggaaagagctcttgctattgaagaacgtactcacgatgaaaaccatccatctttggcgaaaacattgaataacctcgcaatggtgctacaagatcttgaacaacacgaagaagccaagacatatttaaaaagagcacttgctattgCGAAATTTAGATTTGATGACACTCATCCTATGGTGGAGGAAATAGTGAAAAACATGGAAGCAGGTCCTTATAATGGTCAATGA

Transcript

alvinactis_v1_g5319

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan