Gene detail

Detailed information of alvinactis_v1_g5351 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:419901...447090
NR annotation: XP_020894669.1, organic cation transporter protein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g5351

ATGAGTTCTAAAAACTTAATAATTTGTAATTCTTGTGAAAGTCAAATCACTGGCTGTCAAAGGTCAATGATGTGCTCTGATTGTCAAAATTACTATCACCTAAATAGATTGTGCCTAAGATTAGATAACATAGACCATGATCGCTTAACTAATCGAAATGACTTCAAATGCTATCAATGTATAGAAATCCTTTTACCATTTGCCTCTATAAGTGATGATTTATTTCAAATAGAGAAACCATTAACTAAATACATTCCACCAAATGACATAACATTTAATTTATGTGACACTTCACAGGAAGACGACGGTATATTTGGTGACGTTAATCAAGCAATTAATCCAGACATAAATTGTTATAGTGATATAAATTCAAATGTAAACTACTATTCTAGTGATGAATTCAATGAAAAACTAAACTCTCTAAAGTTAaaacatgatgagttatcatttctacatctaaacataagaagtatcagaaataaatttgattcatttttaaactatttaaattgcctaacatataaattctcaataatagcattaacagaaacttggctaagtgacgatgacaacagtcatttatttgacattccaggttactccctcatacagcttaacagaaaaaatagagttggaggaggaatttgtttatttgtcagggaacatttaaaatatcaattaagaaaagatttaacttttacaggccacgataaaagtattgaatcactgtttattgaaatatcgttggaaaagaataaaaacatcataataggaactatatatagaccaccaaataatagatatagtgacttcgaatgtgatttaaatttcattctatcaaaactagatagaaaagataaaccttgttatattctaggtgacttcaatatagatctactaaaatatgacaaatgtaatttctctcatcagttctttaaccagttatcttcgtcgggctttagacctctaatcacaaaaccaactcgcatcacatcttctagtgcgacgttgattgataatatttttacaaatagtcaaacatctgaacatcttaacggaattcttataaatgatatttcagatcatttaccagtctttgcaataaccaagaacgtagaatcatacggattacataattcatcagatcaaggttcttataagactagagtaattaaacaatcgtctcttcgatcattttataactatctaaaaacttgtaaatggaatactacaatgaaagaaatagatcctcaaaaatcaatggaaatattcctaactgactttcttaaactttatgataaatattttccgttgagagaagtgaagttaagaaatggaaacagagaaaaaaacgtttggataacaaaaggttttaaaaagtcatctagaacaaaggaaaagttatatagaagattcttaaaaaagccaactgaaaataacagggttaaatataaagtttatcgtaacaaactaaatcatctgataagaattgctaagaaaaattactttaataataaaattcatgatgcacaaaatgatcctaaatcaacatggcaaaccataaacgagctgattggtaaaaaaaataaaaataagacactacctacttcatttaagtacgaaaataaagatattgatgattctaaagaaatagcaaatcaattcaataatttttttgtgaatgttggaccaaatttagcaaaatcatttagcaattccaatgaatttgtgaaatatttaaaaggaaactacagagattcaatgttcctaaaagaaacaactactgatgaaattataaaaataattcaacatctaaaaaacaaaaacagctgtggaatagatgaaataaatatcaaagtcattaagtttgttgcaccattaattgcactccccctatctcatatatttaacaattcatttatatcaggtcaggttcccgatgaattaaaagtagccttggtttcccctgtatacaaggcttctgataagaatgatttctcaaattatagaccaatatctgtgctaccatgtttctcaaaaattctagaaagaataatgtataatagaatgattgatttcattgaaaaatataagatattgtctgatcatcaatatggttttcgagctaaacgttcaactaatcatgccataatagaacttgtcgataagataacaaattcaattgaaaaaaatgaattaacaGAACCCGATTCTCAAACTCGCCATCGACTCGCTGAGTTTGATGATGTATTCCAACTCGTCAACTCGTTTGGATGCTACCAAAAGATCATCTACTTTACATCGTGTCTGTTGATACTACTTATGGCCTTCCCGTTTGGTGTCTTGGTCTTTGGTTTTGCAACACCAGGATTTCACTGCGCCACATCCAACACAACATGCAAACCAAATACATGCTGTAACAACTgtacttcgtatacatttgaacgttcgtttactagtactgttacagagtggaacctcgtatgcgaccgtgcttatctcaatgccgtcatacaatcgtgcatgttcgtaggcatgctgatcggtgcatccatctcgggaatggtgtcagacgcgtatggtagaaaaacctgcatcttcgtatataatggtattatgATAGTGTCCGGCTTTGCGTCGTCATTTTCTGACTGCATTTCATTGATGGCATTGCTATGGTTTGTAATGGGTTTTGGATTGACTGGTTTCATACTGTCACAGTACATCTACATCATGGAAATAGTAGGCCCTAGTGCACGCACCATGGCGGGCAATATGAACTGGCTGTACTGGTCTGCTGGGTATTTTATCTTTGTATTCCTGGCTTATTATATACGAGAATGGAGAGTCCTTCTGATGGTCACCACTGCACCTGGTGTCCTGTTGTATTTCTTTTGGAGAATCTTCcctgaatctccccgttggcttgtggctcatgacaaactagacgaagctcatgcgatgttgatgaagtatggaggcaacaacaataagaacgtagaccagcatcgcttgagggctttgatcgaagacgtTCGGCAGGCGCAGCTCCACGCACAGCACTCGACAGAAAGGCTGACCCCTGTCTCACTTTGTCGAACACCAAAACTAAGGAAATGGAGCGCTGCATTGGGGATCAACTGGTTCGCCACATCATTCGTCAGCAATGCCTTATTTCTCTACGTGACCAACTTATCGGGAAACATTTACCTGAACTTCACCCTCATACAAGTTATTGCGACTCTACAACAGCCAATACTATGGATTGTCCTGCAAATGTTTGGTCGCCGCATACCGCACATAACAGTGATGGCGTTGATTGCGATTCTTTGCTTCACTGTTCTGCTTGTACCCGACGAATACCCTCTGGTCAAATCAGGGCTGTTCGTAGGGGCAGCAGGAATCACCTTCTGTTTGTGGACGACAATATACATGATAACGTCTGAGCTTTATCCCACTGTTATCAGAAACACTGCTCAAGGGACTGGGTCGACGATTGGTCGGAGCGGTGCCATTACAGCGCCCTACGTAGCCATGTTGGCCAGGATACCAGGCATAAGTGTCGTCGTACCCGTTGTAATATTTGGCGTAACCTGTTTGGTTGCTGGAGTCGTTGCCTTCATGATCCCCGAGACACGGTTTGTCGCTATGCACCAGACCATTGACGAAGCCGAGAACGCCAAGGAGGATTATGGGATACCATGCTGTGGAAAACCAAGCAAAAACTCCAAACACATCTACGCTAAATCCCATGGACAGGAATGCAGTGACTTAGATGCAAAACTATAA

Transcript

alvinactis_v1_g5351

Protein

Uniprot

Uniprot term	Description
O76082	Organic cation/carnitine transporter 2 OS=Homo sapiens OX=9606 GN=SLC22A5 PE=1 SV=1
Q5RLM2	Solute carrier family 22 member 7 OS=Rattus norvegicus OX=10116 GN=Slc22a7 PE=1 SV=1
Q9H015	Solute carrier family 22 member 4 OS=Homo sapiens OX=9606 GN=SLC22A4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00083	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005828	Family	Major facilitator, sugar transporter-like	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24064	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08202	SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5	-	Transporters	ko02000	deepkoala