Gene detail

Detailed information of alvinactis_v1_g6064 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:11185458...11189716
NR annotation: KXJ15782.1, RNA-directed DNA polymerase from mobile element jockey [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g6064

ATGGAAAAAATTCTGAACAATATTTACTTGAACCTGCAAAGCGCAGGAAGTTTTTCGggaccggaggctgttttccgtgttgcaagagaacaaggacacaagaaaataactcgtaaacaagtaaaagactggttggaaaaacaagaaacttacatggtacacaaaccagcccgtcgacaatttacaaggaacagagtcattgtgggaggaaacgacaatcagtttccagccgatcttgtggacttgagttccctgagtaaatttaacgataagtatcgttacttgttcacagtgatcgatgtattttctaagtttgcctgggctattccattaaaaaccaagactggacaggagatcactgatgtctttatgaaaatattcaaaaccggaagaataccatccaagttgcaaactgacaaaggacttgaatttttgaatcgcacatttcagaaatatttaaaagaaaaacatgttcacttctttaccacaaacagtgaaacaaaagcgtcagtcgtagaaagtgaattccaacctgtttcaccaggaactgttaggactgttatcatggcttcccgtaccaaatcctgttcactggatcccattcccactgtcattctaaaacaatgtgttgataccttgtgtgttccaatcacttcaatcatcaacatgtctttcagcacaggggtgttcccttctgatcttaaacatggactagtgacccctataatcaagaagcaaaatgctgaccctgaagacttcaagaactatcgaccaattagcaatctatctttcttgtctgaaaccattgaatgcgtgggtgctacacaactacatcagtaccttcatggcaatggcctctatgcaaggatgcaatcagcctacagagcaaatcacagtactgaaactgcgttactacgagtttgcaatgacataaatctggcattggacaaccaacatgaagtagttcttgtcttgcttgatttgtcctccgcatttgatatggtcgatcatgatattctgctcaacagactagaactacactatggctttaagggtttggttttggactggatcagatcatatctgtctaaccgtacacaggccgttaaagttggacatgcattgtcaacatcctgtcagctattacacggcataccacaagggtccgtccttggtccgaccctttttttcttatatgttgcaccaatcgaagaagttataagtactcacggccttaactgcatggtatatgccgacaacactcaattatacttcactatgaatagatctgatagtggaacaagtggtcttatacaacttgagaaatgtgctcatgatattcttcgatggattcttctttatgggctccctgataaggacattgctaaactgcaacgaatccaaaactctgctgccagactggttacaagaactaagaacgtcgaccacatatcacctgttttccatcaacttcactggcttcctgtcagaaagcgcattatcttcaaagtgctcctgataacatacgaggctctacatggtctggcgccagagtatttatctgaactgctgcctctgcaccaaccatctagatgtctacgctcttcttccaaatttcaactaaaaGGATTGAACCCTCATTTCTCTTTGAACGTCATGGAGAAAACACAGTTTTATGTCTGgctcccctctaatagttccatggatgtgtatcccgataacactctagcagaatacagaattcaacttccTCAATCCATCAAACTTGTAGATGAATGGGAAGTGGCGATAACGGAAATTCAGTACCCTCATACTTGGAACAATGTGCATGCCGCATCGAAATGGAATCGCTTTTACGTTAAAAAAGAAGGTGAGGATGGTCAACGGGTCAGCAAGACATTTGTGAGCCCACAGTACTTACCGGTCAACAGGAAAGAATTTGAGAGTATCGAAGTGAATATAAGGCGAGACTCTGCTGGACAACAGATGATGAAAGAAGAGTTAGGCGTGGCTCACGATGTATTGAATGGAGAAACTATCGTTGATTCACTGGTGAAAAGAGGAAAGAAAGCCATTGGTTCGCTGCCTCCCCAAATACTTCGCGAGGTCAAAAAGGTGGGGGTTGAAAACCTACAAAAAGGAAAGCTCCAGCAAAAATAA

Transcript

alvinactis_v1_g6064

Protein

Uniprot

Uniprot term	Description
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
P21329	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan