Gene detail

Detailed information of alvinactis_v1_g6298 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:13548428...13587071
NR annotation: XP_031556889.1, GATOR complex protein DEPDC5-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g6298

atgaactgcaggcattcaaaaactgcaaaagcggcaaagaaaatacagttttGTTTACACAAGAATTTCCAGCCCAAAAGTGTCAAAGAACAAGAGTCAAATCAAATACCAGATTTAGTTAACTATGATGAGTTTGATGCCAAAATATTTTCTACCAAAACCATAAAAAGACCCAAGGCAAAGAAACATGGACAGAGCTATCGATCTGCACCAGCAATTCCTGCATTGGGTAGTGTTGCAAACTTTGAAAAGCTCAACAGGTCACATGATGATCTCAGTGTTTCATGCGGGAGTTCGCCTTATAATGGAGAACGAAGCATTTCTATCCCATTACCATCAAAGTCGAGAGAGTCAGCCAGACGTTTTCTGTCTTCATCTATGGACAATGCAGACACCCATTTATCAGGTATTCTATTGAGCAATGAGCAGGGTCAACAATCTGGCGATGAATTATTTGTGGAGATTCAACATTTCATCGTTGGTAGTGCAGGTGCACCCCGAAAACTCACCCCTTTTTCTTCCAAGTCTTCTTATGATCCTCGGCGGACTCTTTTTAACCCCTTCAAACCCCTTAACATTCCATGCAGATGGACTTGTAATCGACATCGCTGGGCACATAGCTTTCCTAAAGGGCCAGATGGTGGCATCATCCATAGACAGTTCCTGAAACAGTCTGACAGCAATGCTAAGAAAGCATCTCAGAAGATAATGGATGAACATGGAGCATCATTACTCAAGCAATCTACAGATGATGTTAAACAGATTAAGGAGGATCCGCGTAGTCGAACATTACTCAGCGAAGGCCGTAGAAGTTCTATCTCTGATTCAATGACCGATCACCTGGCACGGAATGGTTCCTTAGCTTCTGATCGTGTACAATTGCGAAAGCGAGGACATGGTAGATCATTGTTTCATCATTCTTTGGATGTAGTTGAGCAGGAGTGGACGGCGGCAGTTAAGACAAGTGTGGACTGGAAGTCCCTGATTGTACCAGCATGTTTACCCCTGACTTCTGAATACTGTCCAGATATGAAAACACTAGATACTGATTACCTTGAATTTCACTACGAGCTGTGTATTGGCGATGACGATGATAATGATGTGTACGTTGCATCTAGAACAAGATCCATGAGTAATCCTACCAgATTGGATGAACAAGCCAGCAGACATCCAGTGTCTGTAGATTCAATGATCACTGAACTCGTAGCTCAAAGATTGTCCAAGGGATTTCAAATATTAACTGATCCTCCACATCAAGAACGACCAACTTTTCCAGCATTCATTTCACAAGATGATGAATTTGATTCAGAGGAGTACTTCCTTAGTCTTGGTCGCAATATTCACAGACTCAGTGCGATTCCTAATCGCTATCAGATAAACGTAACAAGATATCGACCTCGGCATGTACGAGGAACAGAACCCGTTCAATACCGGTATCGATTACGCGTTGAGCACTCAGTAGTCTACCATGTTCACGAGTCTGAGTTTCAGCATGATGAGTTGGATAAGTACAGTTGGAATTACCTTGACCAGCACATCAGTGGTATCCAAGACTTTGCTGAAATGGTAGAGTCTCTTAGATACTGGAAGTCAAGATTTTTACTGTTGCCTCTTCCTAACCGAAAGAAAAATGCTGTTGAAGATGAGAAGAACACACGCATGGAAGGGATTCTGAAGTATTTAGAAATTCTCAATGGAATTAAGAGAAACAAAGTTCCAAGGAGGCCGTTTTCTCTGAAACCTTGCAAACAGCCACACACACCGGAGACTAAAAAAGACAAACAGCAGATTACTGCAGCAGCTGAGATCAAGAAAGACAGTTCGCTATGGACACCATCCCATACAAGTATTGATCTACAGAATACATCTGAAACCAATAGACAACAAACAAAGGATGCCCAACAGACCAAAGTATGTGCAAATGGAGCAAATATTGACCAGAAGAATTTGGAATATTCCTCTTTGAACAAAGACATTTTAGAGAGCCACTCATCAGAAAACTCAAGTGAATCCACTAGCAAATCCATAGATGAGCAGTTTACAGACGAAGACATTTTAACTGTTAATTCTTCCATTGAAAGAATTGCTGAAGAAATGCTTGATACAGGCAATGGTGTACCTTTCCTGCCACCCACTAAAGGCTTGCAACCAACCAGCTTTCTTAGTGTAGACGCTGTCTGGTGGATGATGCAATGCATAAAAGGATTGAATGAAAGGAAACATGctatatcactagcacagAGAATGGTGGATGCAAAGGTTATTCAACATGCCTCAGGAAACCCAAGACAGAATTTTGTTTGTGGTTTTGCTATTTTCTTTATCACACCTAAAGATAAGTGGAATAAAACACAAGAAACCACTGATAACAAACAGGAGTCTCGTACCTACGCCTCCGTTATGTTTGAAGAATTACAGCAGGAGTTCCAAGAGAACTGGCTGGAGGTTACTTTTGGCTACGATAACAGTCATAACAGTCGCGTGCCTGTTTTTCTTGCATCTGATTCTGACATATTACAATACTGGGAAAACTCACCTCGACATTCACCTGTTGTAAAAAGAGGAAGAAGCTCCAGCCAGATACCGCACCAAGACCGTAGTTGTGGGCCAGCTTATAAGACAGTTTATCTAAACTGTGACTTACAAAGGAAAAGTGACCGAAATGAATGGGCAGTTATACGTTACCATGGTAACTACTGTAGTTCACATGCTTTTGAGCTGGAGATCCATTGGATAGAAACCACTGGATCAGTTGTGAATGAATTAGTTCAAGGATGGGCCCGCAAGGCGTCTTCATGTGGATTCCACCTGGTTCCAGTACCAGTCAGTCCTTTTCCAGATCCTTTAGGGAACAATGTGGACCCTTTAAGACTACCTGTGTACATACCCGTCAACATGGCAGCATTTCAATCACACGTTTTTCAAAGTTTTGATCCTTTGACTCATCGTCTCAGAAAGTTCTTGTTTCTTGAGGCCATTCTTGAGAAGTTTGGCTTTCTGAAAGACTCACCCTATGGCTACAATAATCACTCAACCATGCCTGTACAGTGTCGTGTTGACGACTATATCCATCCCTCTGGGGCTGCATTTGTACAAATTCTCAACCAAGACAATTCGGCTGTAATAGGTCCTAGGGAGGAAAATATTGGTTTCTATTGGACTCGGAATTTCACGTTGACAAAGAAATGGCGGTCCTCTTCGACAGGAGATGTGGAATTTGCCACCAAACTTATGACTGATTTTGAGCAGTTTTGTTCAAATAAAACTGGTGCTCTGAAGCGGTTTTGTGACACTGCTGTACAATCACTCCAGAAAGTGGAGGAAGCTTAA

Transcript

alvinactis_v1_g6298

Protein

Uniprot

Uniprot term	Description
P61460	GATOR1 complex protein DEPDC5 OS=Mus musculus OX=10090 GN=Depdc5 PE=1 SV=2
O75140	GATOR1 complex protein DEPDC5 OS=Homo sapiens OX=9606 GN=DEPDC5 PE=1 SV=2
Q9W0E3	GATOR complex protein Iml1 OS=Drosophila melanogaster OX=7227 GN=Iml1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19418	DEPDC5_CTD	DEPDC5 protein C-terminal region	Family	Interproscan
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000591	Domain	DEP domain	Interproscan
IPR045838	Domain	DEPDC5, C-terminal	Interproscan
IPR027244	Family	Vacuolar membrane-associated protein Iml1	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13179	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0010508	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904262	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130	Cellular Component	GATOR1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20404	DEPDC5, SEA1; SEA/GATOR complex protein SEA1/DEPDC5	-	Membrane trafficking	ko04131	deepkoala