Gene detail

Detailed information of alvinactis_v1_g6536 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:17887195...17924224
NR annotation: XP_020902194.1, E3 ubiquitin-protein ligase CHFR [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g6536

atggtactaatacttcccactaataccaacacgactctGACTACATGTAATAGTGGTGGTACTGGAAgtgatgatgatgatgacaatgatgatggaagtgattattgtgatcatcatcatcattcacttccagtaccaccactgaAGTGTGATATCAGTTTTGCAGGATGCAAGTTCCTGTCAGGCAGCCACTGTTTCATTATGAAAGATGATGAGGGCAAAGCGTGGCTACACGATACAAGTACGAATGGTACACTTGTGAATGGGAACAAGGTCAAATCAGGACAGTCTGTGAAACTGTGTCATCAAGACGAAATTAAGCTGGTCCACAGAAAAGATCTCGATATCGGGTTTGTATATCATGATCTCAAGTGTGTGGTTGAGGAAGAAGCTGATCTAGAAAACACCCAAGAATATACAATAGAAGATAATGGAGATTCGCAGACGTCTTCTGTAAAGGATACCTCCAATGGTTCTCAGGTTATTCAAAAACCTTGTGACGAAGGAGGTGAAAAGCGTCAAGGAAAACGGCCACATCATCAGAGTTCAAGTACCAGCGACTCAGCTAGCCCCACCCCTAAACGACAGCACATCGATGACACCAAGACAGATGAATCCACTGCAACACTCTCCAAGAAAAGCTCTTTAGCAGATAATCTGATGTGCAATATTTGTCAGGATATTTTTCACGACTGTGTCAGCTTGCAGCCCTGTATGCACAGTTATTGTGCTGCCTGTTATACACAGTGGATGGAGCGGTCCCGAGAATGTCCTAGTTGTCGTCTTAAAGTTTCTCGAATAAACAGGAACCACTTGGTCAATAACTTGGTGGAAGCTTTTCTCAAAGAAAACCCAGAAAGAAAACGTGCAAAAGAAGAAATCGAAGAAATGGACAAAAAGAATAAAATATCAAGTGACATGTTAAAACCACCACGACAAAGACGTGGCGCTGGAACACTCTTATTTGGAGGAGATGTCGACTCGAACAGCGAGAGTGATTCCGCCGAAGAGGAACTTTCGTTCACAAGTGAATCTGATCACAGCCTGTCAGAATatgatgatgatgatgatgatgacgatgatgaagatgGTACATGTAACTTCTTCAATCCTTTTAGAGATGGCTCTTTTCCAGCTGGTACTATAGCGGGATTATTTGGATTCTTGACCCGTGGTCTTTCCAATAGAAACCCAACCAAAGTCTGCCGACAGTGTCCCTCGTATGTACCACCATCGTCATCTACTGCTCCATTACAATCTGCTGTATCAACCTCAGCTGCTGCCAGTGGTCGTAATACATGCGATGGagccagtactacgtctaccaccaccccaccccccaagagtaatacaaccgttgtagccagtactacgtctaccaccaccccaccccccagtagtaatacaaccgttgtagccagtactacgtctaccaccaccccaccccccaggagtaatacaaccgttggagccaatactatgtctaccaccaTACCACTCCCCTACGTCTGTCCACCAAGTCGACCGCATATTTTGTGTCTGTGTTGTATGCAGTATATGCCAGATAGACGATCTCACAATGGCGCAGCTAATACTATGCCCATACCCCGTCAGACGTGTGGTGTTTGTGATCGTGCTTTCTGTCACTTGTACTGGGGATGTCATGGTCGTTGTAACGGCTGTCTAAAACTTTTTAAAGATTTTATCCTCCAAGATAGTTTAGATAAATTAATCAGCGATAATACATATGAATCAACTATTTTAAAGAATTACCTCAATGATAAACATATCCCATTAACTGAAGTGTTCAAGAAATGTCTCGAGAAACTGGATTCCAAGGAATACAAAGCTAAAGATGTTCAATGTGCGAGTTCGTCAACCATTGTGTGCCAGAAGTGTGCTTTGAGGAATTTCCAGGAGCTTGCTTATCAGTACAGACGGGACATCCCACGGGACGACTTACCAGACATGATTGCTACTGGGGACGGAATTGTCGCACTCAAAGAAAGCCGCATCATGCCACACGATTCAATCACATCTGTGAACAAAAGCGATTCGCCTAGAAGAGTGGACCTCATTGAATGGCGTAGATGTACTGGTTTATAG

Transcript

alvinactis_v1_g6536

Protein

Uniprot

Uniprot term	Description
A5WW08	E3 ubiquitin-protein ligase CHFR OS=Danio rerio OX=7955 GN=chfr PE=2 SV=1
Q6P256	E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis OX=8364 GN=chfr PE=2 SV=1
Q5FWP4	E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis OX=8355 GN=chfr PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498	FHA	FHA domain	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF17979	zf-CRD	Cysteine rich domain with multizinc binding regions	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR040909	Domain	E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR052256	Family	E3 ubiquitin-protein ligase CHFR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16079	UBIQUITIN LIGASE PROTEIN CHFR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007093	Biological Process	mitotic cell cycle checkpoint signaling	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10644	CHFR; E3 ubiquitin-protein ligase CHFR	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala