Gene detail

Detailed information of alvinactis_v1_g6837 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:21651318...21700341
NR annotation: XP_020893766.1, peroxidasin [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g6837

ATGGCCGCACTCCAATACATCGCTTCAATGAAAACAATGGCAGCTCACTGTCGTAGCGGCTGGTCTCGTGCTCTATTAATCGTCCTAGTCGTAGTCAGTCTTGTAGGACGTTCCGTGGCTTGTCCTGAAGGATGCCTGTGTTACAGGACCAATGAAGGACCAACCGTTAGATGTAATTATCAGAATCTCAGTCGGATCCCCGAAGTCCCGACCTCGACGGTTGTACTTGATCTTCGTTTTAATCACATCACCGTGGTAAAGCGTGGAGATTTGGCTGGACTTCATCACCTAACGACACTATTGATAAGTAGCAATAGAATTACCTCAGTCGATGTCGATGCGTTCAATGGTCTTACAGCACTAAAATACCTATATTTGTACAATAACGCAATGAAGGTGATCTCGTCAAGTCTTTTCAAAGGCCTGTCAAGCTTGGAGCAGTTATATCTGCATTTCAATCTCATTTCAAACCTCGAACCAACGATCTTCAAAGGTCTCAGGCGACTCGAAcgactGTATTTACACCACAACAAGCTCACGACACTCCCTAAAGGATTATTCCAGGACCTGACTACTCTCAAACGACTGAGACTGGACTCTAATCAGCTAAACTGTGACTGTGATCTGCTCTGGTTGGCTACTTTTCTTCGTCGAACCCCCAATACAGAAACCGCTGCCACATGTTTTAAGCCTTCTCGACTTAACGGAAGACCGCTGGTCAGGATCAGGCCCACTGATCTTAATTGCATTGCCCCTCGAATCATCAACACTCCAGCAAGCATCGAGGTGACGGTGTCTGATGCCGCAGTCTCGTTCACCTGTAAAGCTGTAGGCGAACCAAAGCCGACGATAAAATGGCGTAAGAACCGTATCCCGCTCCGACAAGATGGCCGCCATATCGTGCATAGTAACGGTACGCTAGATATTCTACGGCCAACTGAAGAAGACGTAGGAGTCTACATGTGTGTTGCACAGAACGATGCTGGAGAAGAAGTAGCCGAGGCTTCGCTGCGTTACTATGGTTTAGAAGCTGTACCATCTTTGACTCATTATCCTAAACCAAAAGTAGAGTCCATAGCAGGAAATACTATCACCATGAAGTGTCGCGCCACAGGAAGACCAACACCAGTAATGCGCTGGACCAAGAACGGCATACAGGTAACGGCAAGGTCAAGGATCAAGGTAACGGGACAAGGAGACTTACAAATCACATCTGTACGTAGATCAGACCAGGGAATATACAGATGTTACGCAACCAACGTAGCAGGGAGTATTGTAGCCACTACAAAAGTAACAATCACAGCCGCACCATATTTTATTGCCAAGCCATCGAACACTGAAGTTCTCGACGGAAGTACAGCGTCTCTAGAATGTCGCGCTGAAGGCTTCCCAGCCCCAACTATTGCATGGACGAAAAATGAAGGTCGTCTACCATCACATGATCGTCATATTGTTCTACCTTCTGGAGTTCTTAGAATCATTCACGCTCGACCCATCGACCAAGGGCAATACGAATGCCACGCTATTAACATTATCGGTGTCAGTATTGCGCGGACTTATTTGACCGTGATTCCAAGAGTGCCTCCAAGGATTACGCAGACACCTAGAGATCAGCGGGTAACCGCTGGCCAAGCAGTTCAAATTCGTTGTAACGCGTCAGGAGCTCCAAACCCCATGATATCATGGATCAAAGACGATGTGCACATCACTGAAGGCAACAGATATTCAACCAGTCAACATGGAGTATTAACTATACGTGACGTGACCCAAGCAGATCAAGGTCGGTACGAATGCGCTGCCAGAAATAGCATTGGTATTGCCACGGCATTGATGGTCCTGTATGTCGAAGTCTCTGACCAGGAATTTATTGGTGACAAGTTTGTGAATGCATCGATAGACCAAGCTATCAGCAGTGTTGACCGAGCCCTCAAATTAACCATCAAAAAGCTGTTCCGTAACTCCAAACCTCGCTCTCCTAGCGACCTTTTAGCTCTCTTCCGCTTCCCTTCGCCCCAGGCTCAGCAGATCGCTCGCGCAGCTGAAGTCTTTGAGCGGACGATCCAACTGGTCCACGAACATGTGGCAAGCCTTCCATTGGTGAACGTAACACAAGGGAAATCCACGAGTTACTTTGATCTTCTCTCTCCTGCTTACATCAATATGATCGCTAATTTATCTGGATGTCACGCGCACAGACGGAAAGACAACTGTTCTGAGTTGTGTTTTCATTTCAAATATCGTTCCGCGGATGGTACTTGCAATAATCTACAACATCCCATGTGGGGCGCCTCGTTGACGCCCTTCAAGCGCCTTCTTAGCCCTGTTTACGAGAATGGCTTCAACGCTCCCATTGGGTGGAGCAATGAATCAACACGACCAAGCGCGAGGCTCATATCTAGAGAGATGATATCAGCGCCCAACGTCACTGATGATACTCAATACACACATATGTTGATGCAATGGGGACAGTTCTTGGACCACGATATGGGTTTCACTGTTACAAGTCTTAGTTTTTCCAGATTCCACGATGGAACCGACTGCACGGCTACTTGTGAAAATAACAATCCTTGCTTTCCGATACAGATTCCCGAGGGCGACCCGCGTATCAAGAAACACCGTTGTATGCAGTTTACCCGCTCGAGTCCCGTATGCGGTACGGGAACTACGTCGGTATTCTTTAGTACCGTTCACCATCGTGAACAAATGAATCAAATCACATCTTTTATCGATGGTTCGAATATTTACGGCTCGTCTGACGAAGATTCGAGGAATTTACGTGACGAACGCAGTCGAGGATTACTTAAAACTAGTCCAGCTATCGATGAATACGGAAAACCACTTTTACCGTTCAATCGAGACTCGCCCATTGAATGCCTGCAACCACGTGACAGCCCCGTCCCGTGCTTCCTTGCGGGTGACTTCCGCGCCAACGAGCAACTTGGTCTGCTGTCTATGCACACGATATGGATGCGCGAACATAACAGGATCGCAAGGGAGCTTGGTCGTTTGAACCCGCATTGGAGTGGAGACAAGATCTACCACGAGGCGCGTAAAATTGTTGGGGCTCAACTGCAGCATATAACATTCACTGAGTGGCTACCTAAGATAATTGGACCCATTGGAATGAAGCTGTTAAGGCACTACCCAGGATATGACCCTAACGTAGATTCTTCCCTCACAAACTCGTTTGCGACTGCTGCGTTTCGTTTCGGTCATAGTTTGATCAATCCTATCATCTACCGTCTTAACAGCACCTTTCAGCCCATCGAACAAGGCAACATCCCTTTGCACAAGGCATTCTTCTCGCCATACAAGATAGTCAACGAGGGCGGTATTGATCCTGTGCTACGTGGCTTGTTTGGCACGGCCGCTAAAAGCCCTGGTGATAAACTTCAACTGTTAAACTCTGAGCTCACGGAGAGATTGTTTGAAATGGCTCATGCAGTCGCCCTTGACCTTGGGGCTTTGAACATCCAACGAGGACGCGACCACGCCTTGCCTGGTTACAATGCCTGGAGAGTACTGTGTAACCTCTCCATTGCAGAAACGTTTGAGGATCTGAAGAAAGAAATCACTAATCCAGTAATCAGAAAGAAGCTAAAGAAACTCTACAACCATCCATCTGATATAGACGTATGGGTGGCAGGATTGCTCGAGGAAATGCAGCCAGGAAGCAGAATTGGAAAAGTGTTTACTTGTATGATTGTCAATCAGTTCAAACGTCTTCGAGCAGGGGATAGGTTTTGGTACGAAAACCCTACTACCTTCCATCCATCACAATTGACCCAGATTCGTCAGACGACTTTGGCTCGTGTTCTCTGTGATAATGGTGACAACATTCAACAAGTCCAGCGTGATGTGTTTAAACGTGCAGGTTATCCTAGTGGATATACATCGTGTACAACCATACCTAGAATGGATCTACGGTTATGGAAGGACTGCTGTGATGTCCAATGTGTCGGCGCAGATCAGACTTTCACGTTCAATACTAATCTAAGAAGTCGACGCTCCGTCAACGATGACGACGTTGAACCACAACCAAAACAGTCTACTGCATTCATGTATGGAAAGCCTCTCACTTCAGCTAAACACTTTTCGCCACTAAAAGGACGGAAGAAAGTTGCTGTGGAACTATTAGAAGCGATAAAAGACGAGTTCGCTGTCAACAACCAACACGGAAGACCGTTAAACACTAGAAATGGCAGTGCTCGTAGTTCACGAAAATCGCAAAGTAAAAAGCTAAAAATGATATCTAATCAAGTAAAAACGTTAGAGAAATCTGTGATGTCCTTAGCAGAAGCTGTGAAGTCTTTGCAAGCAACGGTGGCGTCTTTAAAAACAGAGACTGAAGAAATAAAGAGGAATTCAGCGAAGAAAAGCGGTTGTGTTGCAAGTAATGGCAAGCATTATAGTACAGCATCGACATGGAGGAAAGACAACTGTACAacgtgtacatgtcagggcgcatgcgctgtagaacccagtttgccatttgaagccaaagacgaagaatacgacgaccgttctgcatttttagagtcgggtcttccaaggATATACGACGAACAAGAACTACTAAAAGGAAAACTAGAACTATTAAGTAACACAAACATGGTGGACTTTGCAATGGATGTCCACAAGAGTCTGTTTCCAGATGATGTTAACGAAGTTCCACAAAGTCTTGTAGACAAGCGTGTTGTTGTTGTCAAAGAACTCAAAGAACTCCAATCACAAACAGAACCAATAATGAACTGTTTTAGTGACCCAGAATTTTCAGCGCAGATGCAATCAACAAGGGATGGACGGCAGTTGTTTGAATACCTAGAAAAGAATCATGGTATCAGACCAGAAATGATGGAAACCCTGTACAGATATGCTAAATTCCAGTACGAATGTGGTAACTATGCCGGTGCAGCTGAGTATTTATACTTTTTCAGGGTTTTGTCACCCGGTGGAGACAGGAATTCTTTGAATGCTTTATGGGGAAAACTTGCCTCTGAAATTCTTATGCAAAACTGGGAGACTGCTTTGGAAGATTTGAACCGACTAAAAGAAGTCATAGAAGGAAATACATCGGCAGGTACGCTACAATTGCTACAAGAGAGAACATGGTTGATCCATTGGAGTCTGTTTGTGTTCTTTAATCATCCCAAAGGACGTGATATTATCATAGACTTATTCCTCTATCAGCCACAATATTTGAACGCAATTCAAACCATGTGTCCACACATTCTACGATACCTGACCACCGCTGTTATCACCAGTAAAAGACGGCGTGCAGTCCTTAAAGACCTTGTGAAAGTCATTCAACAAGAATCATACACCTACAGGGATCCTATTACCGAGTTCTTGGAATGTCTTTATGTGAACTTTGACTTTGATGGCGCACAGACCAAGCTTAGGGAATGTGAGACAGTTCTAGTGAATGACTTCTTCCTTGTAGCATGTCTCGATGACTTCATAGAGAATGCTAGACTCTTTATCTTTGAGACATTCTGCAGAATTCACCAGTGTATCAGCATCAGTATGTTAGCTGAAAAACTAAACATGACCCCTGAAGAAGCTGAGCGATGGATAGTAAACCTTATCAGGAATGCCAAGTTAGATGCCAAGATAGACTCAAAACTAGGCCATGTAGTCATGGGTGTACAAGCACCCTCAGTCTATCAACAGATAATAGAGAAAACCAAGGGTCTTCATTTTAAAACCCAAATGTTGTCTGGAAACATAGAAAAGAAATTGTCACAAGACAAGGGTGGatatgattcatatagcggcggggtcaatactaatatgattcatatggcgggGGCTCTTGGAATACATATGATCCTCAGCATTACTAAAAGTCAAACAAATCCAAACAGGCTCCAAGATAAACCATGGACAGACAGACAACAACAGATTCATCTTACATTATCCTGA

Transcript

alvinactis_v1_g6837

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IGL7	Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1
Q3UQ28	Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2
Q92626	Peroxidasin homolog OS=Homo sapiens OX=9606 GN=PXDN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005355 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09440 all species →	eIF3_N	eIF3 subunit 6 N terminal domain	Domain	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF21357 all species →	EIF3E_C	Eukaryotic translation initiation factor 3 subunit E, C-terminal	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR019010 all species →	Domain	Eukaryotic translation initiation factor 3 subunit E, N-terminal	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR016650 all species →	Family	Eukaryotic translation initiation factor 3 subunit E	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR034824 all species →	Domain	Peroxidasin, peroxidase domain	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g6837.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →