Detailed information of alvinactis_v1_g6962 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:23084811...23108758
NR annotation: XP_020893612.1, transcription elongation factor SPT6 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q7KZ85Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 GN=SUPT6H PE=1 SV=2
Q62383Transcription elongation factor SPT6 OS=Mus musculus OX=10090 GN=Supt6h PE=1 SV=2
Q8UVK2Transcription elongation factor SPT6 OS=Danio rerio OX=7955 GN=supt6h PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00651BTBBTB/POZ domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF14632SPT6_acidicAcidic N-terminal SPT6FamilyInterproscan
PF14639YqgFHolliday-junction resolvase-like of SPT6 DomainInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF14633SH2_2SH2 domainDomainInterproscan
PF14635HHH_7Helix-hairpin-helix motif DomainInterproscan
PF14641HTH_44Helix-turn-helix DNA-binding domain of SPT6DomainInterproscan
PF08005PHRPHR domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000210DomainBTB/POZ domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR042066Homologous_superfamilySpt6, Death-like domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR000980DomainSH2 domainInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan
IPR003029DomainS1 domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR038648Homologous_superfamilyPHR domain superfamilyInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR035018DomainSpt6, SH2 domain, C terminusInterproscan
IPR028083DomainSpt6 acidic, N-terminal domainInterproscan
IPR028231DomainTranscription elongation factor Spt6, YqgF domainInterproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR017072FamilyTranscription elongation factor Spt6Interproscan
IPR035420DomainSpt6, SH2 domainInterproscan
IPR035019DomainSpt6, SH2 domain, N terminusInterproscan
IPR032706DomainTranscription elongation factor Spt6, helix-hairpin-helix motifInterproscan
IPR028088DomainHelix-turn-helix DNA-binding domain of Spt6Interproscan
IPR012983DomainPHRInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11292SUPT6H, SPT6; transcription elongation factor SPT6-Chromosome and associated proteinsko03036deepkoala

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