Gene detail

Detailed information of alvinactis_v1_g7101 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:24881806...24897164
NR annotation: XP_020899707.1, glutamate receptor ionotropic, kainate 2 isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g7101

ATGACAACTGAGCCCCGGAAAGACGAAGTTCAACTGGTTGAGAAGTCCACAAATAGCTCGCTCAAGCAGTTTTTCAATAACAAAGCTACCAGCGAAGATTATTTTTCCTCACCTCGGACTCCAGGGAAATTCAATTATTTTGAGCTGAAAAAAGAACGAAGTTTCAGCAGATTTATTCGCTGTGGAGCTTGCTGCATTCAAGAGGATTTGGAGTCGAAGATGAATCTTATTCAAGTGTTTGTTCTTGTAGGGTTTCTCTTTGGAGCATCTTTAGGAAACATGCAACGCAAGAACATCGTCATAGGCGTGCTTTACACAAAAGAGTACGAAAGCCTTCCTAACACACTCCAGTACCTCATCAACTATGAAATCAATGGCAACTTCTTGCTGGACCAGTACAGACTAAAAACCGTCAGGATTGACGTGAAAGGCAAGAATCTCCTGTCAAGAGAGATCGCCGCAACCCTTTCAACAGCTGTTTGCATCTTCGACTTGTACGCAAATGACCCAGACGCCTTTGCGCTGAGCGACTTGTTGAGAATACCGCTGATCACCGCTGACAATCTAAACGTCGATCCACCAAGTCGCTACGTGCTTTCCATGCGACCGCATTATTCGGTCGTCGCTCGAGCCTTGTTTGATATCATCATGTATTTTCGATTTGGTGACGTAGCAGTGCTATATGATGTTCGTAAGACCCGTCTTGCATCATACTTCTATTCTGTGGCTCGAGCAGAGGAGCGTTTTGGTGTCTACCTGATGCCTGAGATGGACCTGACTGACCGGGGTCAAATTGTTACCGCTTTGAAGACCCTGATGAAGACGTACATTAAGAATGTTGTGTTGATTtgcgatcacagggacatggctatgatcatgaatgagGCCTTGGCTATTGGCATCAACGAAGCGGAGTACAAATGGATTGCAAGCGATGTGGAAGTCGCAGGTCCTAACAAGACGTATCCATCCATATTAGGAATGGTAGGACTGAGTCTTCATTTATCCAGCAAAGAGGCCACGAAAAACCTGAAGTTGATTGCCTCAAATGTTGGTGGTGGGATTCCTTTGTCTCCGgttgtctatgcggccatgaacgattctctctatatgctgtcacgtgctctaggaggattgataacGGCGCAGATTTGGAACAAGATTTACCCAAGTACTTCTAGTGACACGTGCCCTCTTAAAACATCACCAAGTCTTGCTGGGACAAAGTTGTTGGAAACTCTTCTAAAGATATCTCATCGAGGACTCACCGGGCAGATTGATTTCTACACAAAAGACAAACGTCGCTCAAGACGAGGTTTCGATATTCTGAATATTGTCAAGACAAAAGTCGAGAAAGTGGGTACGTGGAAATTCAACCCAAAGAACAACGAAGAGACCATTACGATGAAGAACGTGAATCCCATACAGTGGGTCGGAGAGTTTGCAGAACTTGTGAAATGTCACAATCCTGGGAATCCAGGAAAGAAGTTTATCCGAGAAAAGAGAGTTCTGAGGGTCACTGCTGTTATCGAGCCGCCATTTCTGGAATGGAGAAATGGTTCCATCAACGCTCGCCCTGTCTCCAACACCAGTTTGCAAGGATTCTGCTTAGATTTGTTGAACGAACTCGCAGGGATATTGGACGTCGATTATAAGATATTGCTGAGAACCGATACTGCTTATGGGAAGAACGTCAATGGTAGATGGAATGGTATGATTGGAGATCTGGTCGACAAGAAAGCCGACATCGCCCTTGCTCCCATCACAATCAATTCTGAGCGTGAGGCAGTGATTGACTTCACGAAGCCATTCTGGGACTTTAGCGTCAGTTTGATTATGCAGAAAATAACAGAAGAAGAAATTGATTTGTTTGCTTTCGTAAAGCCATTTGATGGGATTGTCTGGATACTGACAATCGGAGTTGTTATTTTCGTTACTGTCATGATGTACATCGTCGATCTGTTCAGTCCCTTTGGCCACAGATCCGAGGCAAGAGACACCGGCGAGGGGACTGGTGATGAGTTTAACTTGTTCAACAGTCTTTGGTTTGCCACGGCGTCCATGTTGCAGCAGGGTGGTGATAACACACCCAAGTCTCCTTCTGGTAGAGTCTTGGCTGCAGCCTTCTGGTTCTTCATTCTCATCATGATTTCTACCTACACGGCGAACCTTGCTGCTTTCTTCACAATAAAAAACTCCAAGAAATTCATCAACTCTCTGGAAGACCTCGCGAATCAAGACAAAATCAGATATGGCGTCTTAAAAGGGGGAGCTATTGACACGTTCTTCGAGAATTCACAGGTTCCTCTCTACCGTAAGATGTACTCGCAAATGCGACAAAAGAATTCGTACGCTCCCAGCACGGGTGTTGGCGTCGAGTGGTCAAGGAAAGGCGGCTATGCATACTTAACAGAACAGCCATATCTCGACTACTATAATATGAGAAAACCTTGTAATACCACCTTACTAAACAACTTAATATCGGCCAAAAGTTACGGGTTTGGACTGCAAAGAAACTCCCCTTACGTGAATGAGCTGTCGGTGGCGATACTGAAGCTCCGAGAGAATGGTTTTGTTGACACCGTTAAATACAAATGGTGGGATGAACGAAGTCAATGCGTCGCCAAAGAGGATTCAGGCTCCGGCTCTACCACCAGTCTTGGCATCAAGAACATGGCAGGAGTGTTTATCATCCTACTTGGAGGAGTTGCCTTTTCGTTTCTCCTCATCGTCATTGAGATCAAGTGTAAGCGAATAGTGGATATGCTGACAAAATCGGGCAAGGGGAAAAGCCGTGAAATAGTCAATCGATCCCAAGAAATCAATTCTGCCGAAAGTGTAAAAGATCCGAAAGGTCAAATTCCTGTGCGGGTTGTAGTGTCCCAGGGGCCAAAGGAACTCAAGCCGGTGGTTCTTCAGGAACAGGTCGCTCGTCGCATTGAAGAAGATCCTTCAAGCTGGAGAGGCTGGTTCAAGACATGGTTGTAG

Transcript

alvinactis_v1_g7101

Protein

Uniprot

Uniprot term	Description
P39087	Glutamate receptor ionotropic, kainate 2 OS=Mus musculus OX=10090 GN=Grik2 PE=1 SV=4
P42260	Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus OX=10116 GN=Grik2 PE=1 SV=2
Q13002	Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens OX=9606 GN=GRIK2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008066	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05313	GRIN; glutamate receptor, ionotropic, invertebrate	-	Ion channels	ko04040	deepkoala