Gene detail

Detailed information of alvinactis_v1_g7275 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:27352070...27374330
NR annotation: XP_020893570.1, beta-glucuronidase [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g7275

ATGAGTACCACTGAAACTCCAACAAATTCATCCAGTAGTGGCGATCCAAGCAGTCACTCATCACAGAGTCAAACTCAGTCTTCGACTCTTGATACAGTCTCAACACAAGATGTTGTTGATGGCATGTCCGACGGCGAGGATTGCAAAGTTAATCAGACTTGGGGACGGTTATTCCCACTAGGAACTGGCTTCAAGGTGGTTGAACTTGTTGATGATGAATATTCATTTGGTCGTGGGGCTGTAAATAAATATCAGTTTGATGCTAATGATTTCAAGCAAAATCCACATTACCAGGCTTTTAGTACCAAGCATTATAGGCTGTATAGGGAGAAGAATAGCAATGGCACATTTAATACATTTATAACTGACTTGAGCTCCAATGGAACCTTCATAAATCAAGAAAAGATTGGCCGAGATAAATCTCAGGTTTTGAACAATAATGACGAAATAAGTCTATCAGTGACTAAAAATAAAGCATATATTTATCAAGAACTTGGAAAAACTTCTGAAGAGCAGAAAAATCTACCTGACGATTTTAAAGCAAAATATACTATATCAAAAATAATTGGCAGAGGTGCATGTGGCGAGGTGCACCTGTGCTTTGCCAAAGGAACCTGCCAAAGGTTTGCAGTCAAAGTGATCAATAAGAAACAGTTTTCCGTTAACACACCTTCCACAAAAGAGGAAGTGGACATACTTAAGTCTTTGTCTCATCCAACCATAATTTGTATAGTGGATGTATTTGAGACACCAGACAGCCTTTACATTGTACTAGAACTTGTGGAAGGTGGTGAGCTCTTTGATAGAGTCAAGAAAGAAAAACGTTTGGAGGAGCCATCAGTCAAACTACTCTTTTATCAAATGCTGACAGCAGTAAAGTACCTTCATGATAAAAATGTTACTCATAGAGATTTGAAACCTGAAAATGTTCTGCTTGCTTCAGACAAAAGTGATACATTGATAAAGATTACCGATTTTGGTTTATCCAAAATGGTTGGGGAACAGAGTTTGATGAAAACATTATGTGGTACCCCTAGTTATCTGGCTCCAGAAGTACTATCATCAGCAGGTGTAGGTGGCTATTCCAAGGCAGTCGACTGCTGGAGTCTGGGGGTGATTTTGTTTGTATGTCTTGCAGGCTATCCTCCATTCAGTGAAGAAATCAAGCCTTACACTCTTACTCAACAAATTTGTAAAGGCTTGTTCAAATTTCACAAACAATACTGGGATCCTGTGAGCAAAGATGCCAAAGATCTTGTAACTAAGCTACTAAACGTAGATCCATCCAAACGTCTGACAGTTGAAAAGGCATTACAACATCCTTGGATGAAGGACAAGGAAATCATATCTAAGGCAGAGGAATTAATGTTTCCGTCGTATGATGATATGGGACCTCCCAGTCATatttcgtgtaatactgttttaaatcaagTTTCTGTTGCATCTAATCTTTCTGGGATGTTGCGAATCAAAGAGTCAGAGACTCGTGAAGTGAAAGACCTTTGTGGAATATGGAACTTCAGAGCTGACATGTCCCGTCAGAGAAACGCAGGATTTCAAGAAACATGGTTCTCTAAGCCATTATCAAAGACAGGTGAAACAATTCCAATGCCTGTTCCATCCAGTTATAATGACATAACCCAAGACAGATCCCTAAGGGACTTTATAGGATGGGCCTGGTATGACAGAGAGGTTTATGCTCCTAGTTCATGGAGGGACAACAAGACCAGAGTTGTGCTAAGATTTGAAAGTGCACATTATTACAGCATAGTGTGGGTAAACGGCAAAGAAGTTATGCAGCATAATGGTGGCCACCTTCCATTTGAAGTTGATGTTACAAATGACCTTTACTATGATCGAGCAAATAGAATAACAGCAGCTATAAACAACACTCTCACACCAACAACATTACCTCCAGGAGAGATAGAATACCCAACGGGAGGTGATGGGTACCCTCCAGGTTACTTCGTCCAGAAGTACATTTTTGACTTCTTCAACTATGCAGGAATTCATCGCCCTGTCAAACTCTATACCACCTCTGTGGTGTACCTTTCTGACATTACCATCACCACAACCTTCCAAGACAATCAATATGCAGTAGTTGACTTTGTAAGTGTTGTTGGTGCAATTAGCACTGTACCAAGAGATGAGATTGTCATGGAATATCAGTTGTTGGATCAAGATGGCTTTGCCGTGGCTAGTACTGGTGGTAGAGGGCTATTCGAGGGACGGCTGCAGGTGAAGAATCCCATTCTATGGTGGCCAGTAGGGATGAGTAACATAACGGCCTACTTGTATACATTAAAGGTCGTCACTGTTGTGAGTTCTCAAGACTTGACTGATGTTTATCGTATTCCGGTTGGAATAAGAACAGTTAAAGTGGAAGGACCCAAGTTTTTGATCAACAACAAACCGTTTTACTTTAAAGGCTTTGGAAAGCATGAGGATGCTGATATCCGTGGGAAGGGCCTTGACTATGCTATGATCATTAAGGACTTCAACTTGATGAATTGGCTGGGAGGTAATTCATTCCGTACTAGTCACTATCCGTATGCTGAAGAGATAATGGACGTGGCTGACAAACAAGGAATTGTTGTTATCGACGAAGCACCAGCAGTAGGGATTGGCGTCAACAACTACGAAACTAAGAACTTGAAGCATCATCTTGAAGTCATGGAGGAACTGATCCGTCGAGACAAGAACCGCCCAGCGGTTGTAATGTGGTCAGTAGCGAACGAACCAAAGAGCGATATCCTAAAAGCTGCTACTTACTTCAAGCCTATTTTCGATACGACTCGTATACTGGATCCCACAAGACCCGTGACATACGTCACACACTACAAGGCTTGGAACGATAAAGTGAGTCAGTATGTTGACGTCATCTTGTGCAATCGATATTACTCCTGGTACCACGACTACGGCCACACCGAGCTCATTAGTAAACAACTTGAAAAAGAGCTGAGAGACTGGTATGACAAGTTTCACAAACCGGTTGTTCAGGCTGAGTATGGTGCTGATACAGTAGCTGGCTTACACATGGATCCTCCTGTGATGTTTACTGAGGAATACCAGGTTGAAACACTGCAACAGTATTTCCCTGTATTTGACAAACTCAGAAGCGAATTCTTCGTTGGTGAAATGATTTGGAACTTTGCGGACTTCATGACAACACAAGGAATTACTAGAGTTGTTGGCAACAAGAAGGGAATACTTACACGACAAAGGCAGCCCAAAGCAGCGGCTTTTATTCTTCGCCAAAGATACCTTAACATAAAACTCGAACAAACTCCATCAGGCACTGGGGACGACTTACTGGATGCCCTTATTAAGTTTGAGAGCCGAACGCCATCAGCCACTGCAGCAACTCAAGCTATTTATAGTCAAGGCCGAAAATGA

Transcript

alvinactis_v1_g7275

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O97524	Beta-glucuronidase OS=Felis catus OX=9685 GN=GUSB PE=1 SV=1
O18835	Beta-glucuronidase OS=Canis lupus familiaris OX=9615 GN=GUSB PE=1 SV=1
P12265	Beta-glucuronidase OS=Mus musculus OX=10090 GN=Gusb PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001389 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF00703 all species →	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR023230 all species →	Conserved_site	Glycoside hydrolase, family 2, conserved site	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR006102 all species →	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR006101 all species →	Family	Glycoside hydrolase, family 2	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR023232 all species →	Active_site	Glycoside hydrolase, family 2, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g7275.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →