Genomic Location: chr_3:28328079...28442303
NR annotation: XP_031574227.1, nesprin-1-like [Actinia tenebrosa]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g7346 |
| Transcript |
| alvinactis_v1_g7346 |
| Protein |
| alvinactis_v1_g7346 |
| UniProt accession | Description |
|---|---|
| Q91ZU6 | Dystonin OS=Mus musculus OX=10090 GN=Dst PE=1 SV=2 |
| Q9QXZ0 | Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4 OS=Mus musculus OX=10090 GN=Macf1 PE=1 SV=2 |
| D3ZHV2 | Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus OX=10116 GN=Macf1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001037 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02187 all species → | GAS2 | Growth-Arrest-Specific Protein 2 Domain | Family | Interproscan |
| PF00307 all species → | CH | Calponin homology (CH) domain | Domain | Interproscan |
| PF00435 all species → | Spectrin | Spectrin repeat | Domain | Interproscan |
| PF17902 all species → | SH3_10 | SH3 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018159 all species → | Repeat | Spectrin/alpha-actinin | Interproscan |
| IPR036872 all species → | Homologous_superfamily | CH domain superfamily | Interproscan |
| IPR001589 all species → | Conserved_site | Actinin-type actin-binding domain, conserved site | Interproscan |
| IPR003108 all species → | Domain | GAR domain | Interproscan |
| IPR001715 all species → | Domain | Calponin homology domain | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR002017 all species → | Repeat | Spectrin repeat | Interproscan |
| IPR041615 all species → | Domain | Desmoplakin, SH3 domain | Interproscan |
| IPR043197 all species → | Family | Plakin | Interproscan |
| IPR036534 all species → | Homologous_superfamily | GAR domain superfamily | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23169 all species → | ENVOPLAKIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008017 all species → | Molecular Function | microtubule binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005882 all species → | Cellular Component | intermediate filament | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0042060 all species → | Biological Process | wound healing | Interproscan |
| GO:0045104 all species → | Biological Process | intermediate filament cytoskeleton organization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10382 | DST; dystonin | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
