Gene detail

Detailed information of alvinactis_v1_g8108 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:5165775...5227371
NR annotation: XP_020907891.1, uncharacterized protein LOC110245934 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g8108

ATGAGATCGTTTCTTGTTGTGGTGTTAGTTCTCGCAGCTGTTGTAGCTGTTGCAGGCTTGCAGCACGGAACACTTCGAATAGGAAGGTCATCATTAGATGGTTACTGTGATACTGTTACCTTCCCATCAGCCTTCACGGGTGTTGGATCAGTGAAGGTGTTTACGTCAGTAGGTTTTGGCACGAGCTCAACACGTGTACATGACGTAGTGTTCACGTGGGTTGAGTCTGTCACTACAAGCAGCTTTAAAGTGTGCCTAGTTGAGAGTGGGACTGGATCCAATGGTAACGCGACGATTAATTGGATCGCTTACCAGGGAACTGAATTTGGCGTGGCTGACGGGAGTGCAAGGTTTAGGGACTGGACAACAGGGACCCAGTGTAATCATGTTCCTCTGCCACAGACTCTTCCCAGAATGCCTCACGTCTTCGTTACTGTACATCACAATGTGTTGGACAAAAAGAGAGATGCAGCGACAGTTTGGGTGGAAGACGTCACTCGAGACGGCTTTACTGTTTGCACGAGAGAAGGGAGAACGTTTGATGGACGTCATAAAGACATTGACGTGacatggatggctatgactgaagtcccgcagacatggaattatcatgactttgtcgccatagacttccccaacacactactgcccaacgaggcagataatgatgccttttgtcagATCGTTGACTTCAAAGAACCCTACTACTCTCCACCGTCAATTGTTCTCGCACCAAGCCACGTGTACGACAGCAGTAACGTCAACTCTGTCCGCCCTGAACACAACTCCATTGCAGCATGGATAGAGGAAACCACACACACTTACTTTAAGACGTGTGTAAAGGATCTTGTTGGACTAAACAATAAACATCATCCAATCAGAGTAGACTATCTTGTATTTGGAGATCTCGATCCTTGCATCAACAAGACTTGTGAGTATTTTGGAATCTGTCAAGCAATGTCATCAAGTCAGAGTCAATGTGTGTGTCTTACCCATTGCCCGTCATACCAAGACCTGGTGTGTGCCACTAACGGCCAAACGTTCGACAACATGTGTGTTATGAAGAGATACATTTGTAGGACCATGGGGAACTATTCTTATTACCATCCAGGTGGTTGCCAAGGTTTCCCATTGGACAAGGGAAGACAATACCTCAGCCATGTTTCTTCTTTTGCTGAATCCCACTGCGAGGTGGTTTCTCTAAAACCCTACACATTTTATCCCGACAAACCTGTACATGTCCAGTTAACTGTCAACTACATCAATACGTCACTTCCGGCCAAAGTACACGACGCAACGGTCACGTGGACAGAGAAAGTGAGCACGGATAACTTTACGGCGTGTATAACTAAGACTGGAAGAGATGACAAACAAACCAATGATATAACATCAGTTGATTGGATCGCTTATCAAGGGGCACCCAACGGTGGGGTGACTGGGAAGGAGCGGTTCACGCAATGGTGGACTGGTACCAAGTGTAGGactctatcacttcccagtGGTAAATTCACGGGTTCTCCTACAGTACTAGTTACTCTTGAACATAAACGAGATGGACTTAAACACGATGCTGCCAGTGTGTGGGTGGAGGACATCACCTCGTCTTCATTTCAAGTTTGTATCAGAGAACTACAGAACTTTGATGGTATacatgaagagattgatgtggtacgttataatagtattagacgtctaaGACTGGTGGCTTTCGAGACTCTTCATCGTCCACTATTCTCTGAACACGACAGTGTTTACTTTGCGAATGACTACACTCCACTGAAATCAGACAACTACGCATTTTGTAAGAGCGTGAATATAACAAGAAACCATACAGTTCGACCATTAGTGATGATAACAGCAACGCACAACACTGGTGTCGGGCGTAACAACCCACAATGCAACGGGATCTCTGCATGGATTGAGAACATCACCTCTCACACATTCCGTGTTTGTATGAAAGAGTTGTACTCGGATCGTTATGACCCAGTCACACTACAGTACACGGTCGTATCAGATATCTGCGGTGAAGGTTGGACATACTTCAATGGGTTCTGCTACATGACCAACTCATCTTGTGCGCCATGGCAAGCAGCTCAGTCCAGTTGTCTTAACGTCAACGCAAATCTAACCAGCATTTCCAGTCAAGAAGAAAACACGTACGTCCAACATCGACACGGAGGTGACACTGGATGGATTGGATTCCAGGATATTCACAGTGAAGGCAACTTTACCTGGATTGATGGAAGTACGGTCAATTTTACTTACTGGGCGAGGAATCAGCCTAATGGTTACCCTGGTGACCAGGATTGCGTGCACACTCTGGGATTACGTCATGACTATCACTGGAATGACGTCACTTGTGGATCCTGTCACGCGTACACATGTAAACGAGatatcgatgaatgttcgtctggtgtccatacttgtcatgctggtgcaagatgtaccaataccattggttcctatacttgtcaatgtaacaatcctggttactatagtgatgggcgcacgtgtacagctcccaagtcttgtagtaacgcaaagtctcttgggtaccatgaaagcaagcattacgtcattgatcctgatggacccaatggtgcagcgcagccattcagcgtctactgtaacatgaccagtcacaatggcattggcgtgacagttgtgagtcacaacagcgaagtccgcaccgtagtggttggttgtgaggctaatgggtgctatagacgtgatgtggtttatgatgggatatctagtgatctgaaccaactacgagcattgacatccatctcaacccattgtgaacagtacatcaaatacgagtgtgtggatgcactgttactgtatcatcgtgtagatgcacagacatcatggcttgtgtcacgtgatgggcgtcaaatgaagtactggggcggcgcgtcacgtgacagtggaatgtgcgcctgtggcatgacgggaagctgtgcaagcaatgctagctgtaactgtgacgcaaacaaggacttttggcttgaagattctggtttactgaactacaaagaagatcttcctgtcatttcgctaaggtttggtgatgtaggagattctgatgaacttggatatcatactcttggaaagctgagatgttacggtcaaatggcttga

Transcript

alvinactis_v1_g8108

Protein

Uniprot

Uniprot term	Description
Q9C0A0	Contactin-associated protein-like 4 OS=Homo sapiens OX=9606 GN=CNTNAP4 PE=1 SV=3
Q0V8S9	Contactin-associated protein-like 5 OS=Gallus gallus OX=9031 GN=CNTNAP5 PE=2 SV=1
Q96GW7	Brevican core protein OS=Homo sapiens OX=9606 GN=BCAN PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350	Domain	Kazal domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR050111	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan