Gene detail

Detailed information of alvinactis_v1_g8253 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:6726855...6739376
NR annotation: XP_048014130.1, uncharacterized protein LOC125247008 [Megalobrama amblycephala]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g8253

ATGGCGGATGTTACAGAGCTGTCACAGAAGTTGGCTGAGCTTCAGGCGAAACTCGATGAGATGAGTCAGATGGCTACAGCTGGACCAAGTACCCAAGCACAACCCACCATCAAGGTCAGCGTGCCCAGAGAAAGGAAGCTGCGGAAGTACCAAGGCATGAGGGATGACAAGATCCTGGAGGATTGGGTGGAGGACGCAAAACGAGCAGTATCCGCCATGAAGTTGACCGGTGCTGATGCAGTGGACTTTCTCTACAACAGCCTGGAGGAGCTGCGAAGGACGAGATCGGGAGTCAATCCAAGATTTCTCCTATGCCTTGATGACCACCATGGAACAGCTGCACAAGGCATACCCGGGGCTGTTCCTGAAGGAGACCGAGTACTGAGGGACCACTTTGTGGAGAACCTACGAGATCCACAACTACGGAGGGATCTACGGAGGCTGACACGGGAGCACCCAACTAAGACATTCCATGATCTTCGGGATGAAGCTCGTCGCAGTATGGAGGAGAGCCACTTACAGTCCAGACAAGCTGCTATCCGAGAGGTGGAGGCAGAGTGCAACCAGGCCAGCGGATTCTCACCCAAGATCATCCAAGATCTCCTGGCAGGACAGAAGCTGCTTGCTGATGGACTTGAGCAACAACAAAAGATCCTGgctgaaacgcaggcagcattgtcaacccttaccatccaagtaacccaaaagagggaaaggcggtgttatcactgtggtgaccctgggcacattaaacctaattgcccaaagctgcaagaggatctggctaagaggccaaagggagagaatggcaagTTGGCGgatgacatcaagatagtcggcgcaagccctaccattgtggcgaaggttggaggagtcgcagtacggagtttagttgatactggttccatggtgacctttgttacagagtcattctttaaagacaagctgcaaccaatgcatggggatctcaggaagaggagttctattattgagcttcggggggctaatggcctagagatcccctacattggctacatcaagacaactgtggagatcgatggagtgtcagtaccaaattgtggagtattgataatgaaagacactccagccactacgcagatgcgaggaggtgcgcctggtctaattggaacgaacgttctgggccaggtgcccaagtataagaacattcttgaactacatgaacaagaaccaaaaagaaaaatagaactggatttgttaaagtggctggcacagacaaagtctgggtgccaccctttaccgaatctgacgtcacagttactggtccaccttggggaacaagtgcagttgttgaacctcggagtaccagtgcagggaaaccttacagtagctaacactcttgttgatacaaccaaatcgtgtctcgtgattcgcgttgcaaaccacactgcgaaggatatctggctgcaagccaaggacacgtattggtatcatcagggagggtgcagtggaactgttacaaagggcattataaagcccagtaaaagtgactatgcatccccaatagtgcttgtgcgcaagaagtctggtgctctgcgtatgtgtgtcgattatcggaaactcaatgcaaagaccaagcgagatgcctacccactaccacggatcgaggaatcgctggacgcactgaaaggggcaaagtacttttccaccatcgatctggcatcagcgtataaccaggtagaagtggatcctcgagaccgtcacaagactgcattcaccacaccgatgggactctatgagttcaatagaatgccgttcgggttacaaaacgccccggcaacattccaacgactgatgcaaggtgtcttcagggaagatctgctacagaagttgatggtctaccttgatgacatcatcgtcttctctcccaccatagaggaacatctaatacgcctaaaggtggtgtttcgcaagttgagtgagcatgggctgaagatagaaccaaccaagtgtcagttcttcggcaacgaagtgacctacctgggacatgtggtatcagcagatggagtctcaacagatccagaaaagacaaaagctgtaaaagagtggccggtaccagtgactgtgcgcgacttgaggtcatttcttgggtttgcatcttactaccgaagatttgtacccaagtttgcacagattgcaggtccccttcacaaagtggtagctgaactgggaagtgccggaagtaataagaccccgaagaagctaattggaaccgtttggacacaagattgtcaggcagcgttcaatcagctgaggactttacttaccacagcaccagtattggcctacccagattacacccaaccctttatactggaaacagatgcatccaacaaaggactcggggcagtgctctcgcaacagGATCCAAGGCGGTTAAAATTCTTTGACGAAGCTGGAGTGAAGTATCCCGATATAGGAACTCGCCTTTATGGACACGCTCCTATCGGCGAGCGATGCATCGAAGTTGTGAGAAAAGTAGAATCTCCCAACTCGACGGTCAACTTGATTGTTTCACTGAATGGGCCAGAATATTACGATGTAATTGCTGGAGCGACTAACAACATCGAATTTTTGCAATTCTTTACCAGGGGATTAAATGCTGTGAACCCAATAACTCTGCGTCCTGTTCTTCAAACTGGGGATATTGTAATCATGGACAACCTCTCTGTTCATCACTTCGATGCAGGCGAAGTTCTAGAGGAATTCCTCGGAGACATGAAGTTGGCTGAGCTTCAGGCGAAACTCGATGAGATGAGTCAGATGGCTACAGCTGGACCAAGTACCCAAGCACAACCCACCATCAAGGTCAGCGTGCCCAGAGAAAGGAAGCTGCGGAAGTACCAAGGCATGAGGGATGACAAGATCCTGGAGGATTGGGTGGAGGACGCAAAACGAGCAGTATCCGCCATGAAGTTGACCGGTGCTGATGCAGTGGACTTTCTCTACAACAGCCTGGAGGGAGCTGCGAAGGACGAGGTAAGGCTGAGGCCAGCCACAGAGTGGAGTACCTCTGATGATGTGTACCAGATTCTCCGGGACACTTTTGGGGAGAAACTGACAAAAACTCAACTACTGCAGAGGTTCTTTGGTCGTCATCATAAAGATCGGGAGTCAATCCAAGATTTCTCCTATGCCTTGATGACCACCATGGAACAGCTGCACAAGGCATACCCGGGGGCTGTTCCTGAAGGAGACCGAGTACTGAGGGACCACTTTGTGGAGAACCTACGAGATCCACAACTACGGAGGGATCTACGGAGGCTGACACGGGAGCACCCAACTAAGACATTCCATGATCTTCGGGATGAAGCTCGTCGCAGTATGGAGGAGAGCCACTTACAGTCCAGACAAGCTGCTATCCGAGAGGTGGAGGCAGAGTGCAACCAGGCCAGCGGATTCTCACCCAAGATCATCCAAGATCTCCTGGCAGGACAGAAGCTGCTTGCTGATGGACTTGAGCAACAACAAAAGATCCTGGCTGAAACGCAGGCAGCATTCTGCAAGAGGATCTGGCTAAGAGGCCAAAGGAGAGAATGGCAAGTTGGCGGTAAAAGCcaaccctccacggcagtgagccatgtcgtggaggagaagcgtggtggctctgatctcttgaaggatgacatcaagatagtcggcgcaagccctaccattgtggcgaaggttggaggagtcgcagtacggagtttagttgatactggttccatggtgacctttgttacagagtcattctttaaagacaagctgcaaccaatgcatggggatctcaggaagaggagttctattattgagcttcggggggctaatggcctagagatcccctacattggctacatcaagacaactgtggagatcgatggagtgtcagtaccaaattgtggagtattgataatgaaagacactccagccactacgcagatgcgaggaggtgcgcctggtctaattggaacgaacgttctgggccaggtgcccaagtataagaacattcttgaactacatgaacaagaaccaaaaagaaaaaatagaactggatttgttaaagtggctggcacagacaaagtctgggtgccaccctttaccgaatctgacgtcacagttactggtccaccttggggaacaagtgcagttgttgaacctctcggagtaccagtgcagggaaaccttacagtagctaacactcttgttgatacaaccaaatcgtgtctcgtgattcgcgttgcaaaccacactgcgaaggatatctggctcaagccaaggacacgtattggtatcatcagggagggtgcagtggtccagacaggagagcagttggagttctatcaggaaagtaacagagtaactgtctcttgcaacctcagtgctagcccacagcagccaccctcacgggaagctgagggcaccgtacgatggcagaggaagcaagagctcccaaacgggattactctggataactttcccgggacggcacaacaactggaggaggctctggctctgttcaccgaatacaaggaagtgtttgcaactaataaggaagacctggggtgcacatcgacaacatatcatcggatccatacggaggatgatgttcctgtcatggagcgccacaggaggataccacccaatcaatttcaagaagtacagcaacatcttcaggaactgttacaaaagggcattataaagcccagtaaaagtgactatgcatccccaatagtgcttgtgcgcaagaagtctggtgctctgcgtatgtgtgtcgattatcggaaactcaatgcaaagaccaagcgagatgcctacccactaccacggatcgaggaatcgctggacgcactgaaaggggcaaagtacttttccaccatcgatctggcatcagcgtataaccaggtagaagtggatcctcgagaccgtcacaagactgcattcaccacaccgatgggactctatgagttcaatagaatgccgttcgggttacaaaacgccccggcaacattccaacgactgatgcaaggtgtcttcagggaagatctgctacagaagttgatggtctaccttgatgacatcatcgtcttctctcccaccatagaggaacatctaatacgcctaaaggtggtgtttcgcaagttgagtgagcatgggctgaagatagaaccaaccaagtgtcagttcttcggcaacgaagtgacctacctgggacatgtggtatcagcagatggagtctcaacagatccagaaaagacaaaagctgtaaaagagtggccggtaccagtgactgtgcgcgacttgaggtcatttcttgggtttgcatcttactaccgaagatttgtacccaagtttgcacagattgcaggtccccttcacaaagtggtagctgaactgggaagtgccggaagtaataagaccccgaagaagctaattggaaccgtttggacacaagattgtcaggcagcgttcaatcagctgaggactttacttaccacagcaccagtattggcctacccagattacacccaaccctttatactggaaacagatgcatccaacaaaggactcggggcagtgctctcgcaggaacaggttttgctcgaaattcacgaaatttctcacagGCGGTTAAAATTCTTTGACGAAGCTGGAGTGAAGTATCCCGATATAGGAACTCGCCTTTATGGACACGCTCCTATCGGCGAGCGATGCATCGAAGTTGTGAGAAAAGTAGAATCTCCCAACTCGACGGTCAACTTGATTGTTTCACTGAATGGGCCAGAATATTACGATGTAATTGCTGGAGCGACTAACAACATCGAATTTTTGCAATTCTTTACCAGGGGATTAAATGCTGTGAACCCAATAACTCTGCGTCCTGTTCTTCAAACTGGGGATATTGTAATCATGGACAACCTCTCTGTTCATCACTTCGATGCAGGCGAAGTTCTAGAGGAATTCCTCGGAGACATGGGAATTGAATTGATATACACACCTGTGTATTCACCCGACCTCGAGATGTGTTTCAATATGTGA

Transcript

alvinactis_v1_g8253

Protein

alvinactis_v1_g8253

MADVTELSQKLAELQAKLDEMSQMATAGPSTQAQPTIKVSVPRERKLRKYQGMRDDKILEDWVEDAKRAVSAMKLTGADAVDFLYNSLEELRRTRSGVNPRFLLCLDDHHGTAAQGIPGAVPEGDRVLRDHFVENLRDPQLRRDLRRLTREHPTKTFHDLRDEARRSMEESHLQSRQAAIREVEAECNQASGFSPKIIQDLLAGQKLLADGLEQQQKILAETQAALSTLTIQVTQKRERRCYHCGDPGHIKPNCPKLQEDLAKRPKGENGKLADDIKIVGASPTIVAKVGGVAVRSLVDTGSMVTFVTESFFKDKLQPMHGDLRKRSSIIELRGANGLEIPYIGYIKTTVEIDGVSVPNCGVLIMKDTPATTQMRGGAPGLIGTNVLGQVPKYKNILELHEQEPKRKIELDLLKWLAQTKSGCHPLPNLTSQLLVHLGEQVQLLNLGVPVQGNLTVANTLVDTTKSCLVIRVANHTAKDIWLQAKDTYWYHQGGCSGTVTKGIIKPSKSDYASPIVLVRKKSGALRMCVDYRKLNAKTKRDAYPLPRIEESLDALKGAKYFSTIDLASAYNQVEVDPRDRHKTAFTTPMGLYEFNRMPFGLQNAPATFQRLMQGVFREDLLQKLMVYLDDIIVFSPTIEEHLIRLKVVFRKLSEHGLKIEPTKCQFFGNEVTYLGHVVSADGVSTDPEKTKAVKEWPVPVTVRDLRSFLGFASYYRRFVPKFAQIAGPLHKVVAELGSAGSNKTPKKLIGTVWTQDCQAAFNQLRTLLTTAPVLAYPDYTQPFILETDASNKGLGAVLSQQDPRRLKFFDEAGVKYPDIGTRLYGHAPIGERCIEVVRKVESPNSTVNLIVSLNGPEYYDVIAGATNNIEFLQFFTRGLNAVNPITLRPVLQTGDIVIMDNLSVHHFDAGEVLEEFLGDMKLAELQAKLDEMSQMATAGPSTQAQPTIKVSVPRERKLRKYQGMRDDKILEDWVEDAKRAVSAMKLTGADAVDFLYNSLEGAAKDEVRLRPATEWSTSDDVYQILRDTFGEKLTKTQLLQRFFGRHHKDRESIQDFSYALMTTMEQLHKAYPGAVPEGDRVLRDHFVENLRDPQLRRDLRRLTREHPTKTFHDLRDEARRSMEESHLQSRQAAIREVEAECNQASGFSPKIIQDLLAGQKLLADGLEQQQKILAETQAAFCKRIWLRGQRREWQVGGKSQPSTAVSHVVEEKRGGSDLLKDDIKIVGASPTIVAKVGGVAVRSLVDTGSMVTFVTESFFKDKLQPMHGDLRKRSSIIELRGANGLEIPYIGYIKTTVEIDGVSVPNCGVLIMKDTPATTQMRGGAPGLIGTNVLGQVPKYKNILELHEQEPKRKNRTGFVKVAGTDKVWVPPFTESDVTVTGPPWGTSAVVEPLGVPVQGNLTVANTLVDTTKSCLVIRVANHTAKDIWLKPRTRIGIIREGAVVQTGEQLEFYQESNRVTVSCNLSASPQQPPSREAEGTVRWQRKQELPNGITLDNFPGTAQQLEEALALFTEYKEVFATNKEDLGCTSTTYHRIHTEDDVPVMERHRRIPPNQFQEVQQHLQELLQKGIIKPSKSDYASPIVLVRKKSGALRMCVDYRKLNAKTKRDAYPLPRIEESLDALKGAKYFSTIDLASAYNQVEVDPRDRHKTAFTTPMGLYEFNRMPFGLQNAPATFQRLMQGVFREDLLQKLMVYLDDIIVFSPTIEEHLIRLKVVFRKLSEHGLKIEPTKCQFFGNEVTYLGHVVSADGVSTDPEKTKAVKEWPVPVTVRDLRSFLGFASYYRRFVPKFAQIAGPLHKVVAELGSAGSNKTPKKLIGTVWTQDCQAAFNQLRTLLTTAPVLAYPDYTQPFILETDASNKGLGAVLSQEQVLLEIHEISHRRLKFFDEAGVKYPDIGTRLYGHAPIGERCIEVVRKVESPNSTVNLIVSLNGPEYYDVIAGATNNIEFLQFFTRGLNAVNPITLRPVLQTGDIVIMDNLSVHHFDAGEVLEEFLGDMGIELIYTPVYSPDLEMCFNM*

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan