Gene detail

Detailed information of alvinactis_v1_g8438 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:9983407...10022065
NR annotation: KXJ21652.1, Transient receptor potential cation channel subfamily A member 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g8438

atgcaaagcagtggtgaacattttcaattaacaattaaagtaagtaagcagAATTTGGAAGGCAAAGCTGCAGACGATGTCGACAAAAGGGAATCTGAAGTACGAGATAAGATAAGAGCCATTGTTCCATGTGATATTAAAGCACCAAATCCTCTTCCAATTCCCGACGATCTGTCTACGAAATACGGCCCGCCATTTGATGTTATTTCCACAAGTCTTTGTCTTGAAGCCGTTGTTGAAAGCGAGCAAGAGTACAAAGATCACGTTGCATTTCTTGCAAAGATGCTTCGCCCTGGAGGCTACTTAATGATGCAAGGTGTGATTGAGGAAACCTTTTACACCGTTGGCAAGAAGTTTTACGTTTTTCCTTTGACCAAGGAAATGATCCTCGATGACATCAACGTCATTACTAGTTTTGAGCATCGATGTCTGACGCCGCTCCACGTGGCTGTGCGCTGCAATTCGTTAAGTGTAGCACGTGTTCTCATAGAGAAAGGAGCAGATGTCGACAAACGGTCGTTCTTTGGTCAGCACGCACTGCATTATGCAGCAAGCCGAGCAAGTACAGAACTCAATAAGttgttgtacggtgccgatccatGTCAAGTTGACTACGATTGCTGCACAGCGATACATTACGCAGCCAAGGAAGGTCGAGCGGACATACTTAGAGAACTTCTCAAGACAGCGTCCATGGCAGAAGTTTCATTTTTTGATACTGCTAACGCTGATCGAAGAGACACCAACTCTAGCCTTCAGCTATCAGTAGAACACGACCATGTTGAGGCTGCTAAAGTATGCATAGAATATGGAGCTGACCCATCAGCTGTGCAGAATTATAAGAAATCTAATGAAAATAGACGACAATCTCGACACACCCTTCATGTTGCTTGTAATAATGGAAATGATGACATGGTGGCTCTGCTGTTGTTCCATGGTGCAGTCATTGATGCTGAAGACAAAGATGGTATGACACCAATCCTAAGAGCATCCCTCGCTGGCAAGGTAGATATCGTTGATATTCTCCTCAACGAGGGTTCAGATGTCCTACCTCCTCCTGGTTCAACAATGCCTGCGCCACTTCTATGTGCAGTCAAACGAGGGCACAACAAGGCGATTGTGTTTTTGCTGAAGCGAGGTTCTCCCATAGCGTTGCGTGACACGCAGTACAGGACATGTCTTCATATTGCTGTATATACTGCTGGGATTGAAACAGTCCGAGTGATTCTAAAGAATGGCGGTGGAATTCTTCTAGACTCGAGAGACAAAGACGGTAAAACGCCAATGCATTACGCTGCTGCTAAAGGTGTTATCGAGATAATGGAAAAGCTTTTACAAGCAGGTACACGTGTCGATCTAAAGGACGAGGATGAGAAACTCCCTCTACACTACGCCGCCGAGAATGGTCATCTTAATTGTGTCCAAGTACTGGTCAACAAGCTTCCATCGTCGATAGACAGACACGATTCACGACTAAGAACACCGCTGAACTACGCAGCTATAGGCGCCCACAGTCTTGTTATGCGTTATCTACTAAATAAAGGAGCAGATACTGACAACAGGGACGACGATCACGTGACCCCACTTATTCATGCTGCAAAGTGTGGTTGCTATGTTACCGTAGAGACGCTCTTAGACGACGGGGCCAAGATTGACGCTATTGACAAAAACAAAAATACAGCTCTCGTAACTGCTGCCGTTCATGGGAAGGCTACAGTCGTTACCATACTCCTGGACCGTGGAGCTGATGTATCGATTGTTTCACTGAGCGATCACAACTGCCTGACTGCTGCTACTGCGTTTGGTCACAGAACCGTGTGTATGGCCATAGTTAACCACAGCAGagaaagccccacaaaagcttgtgggtacgaccttgaccttggccgtcttttccgcgaacaagatggcaatgaatcggcgatggtggagagtgagcgtatggtgactgttatagaaaaATGGGAGGAGGCGTGTCAGTTTGAAAACAATGACGGCTATCCACCAATCAAAGCCCTGATTGAAAGGTTTCCTGACGTTGTTAAGcatcgctacagtcttggtggtgttcttgccgctgttattgttgttgatggtggtgatgttcatgatgatggtcatgctgttttatttggtaaaactGTTGTCATGGACAAGTGCATTACTTATTCTGAACATCAAAAGAACGACGataaattggagGTTACTTATCGGTTCGATTACCTCGACCCAGACCCTCACAGTCAGACGTTTCGCCGGGAGAAAAAGTTCTTTGCTCCAAAGGACATGCTAGATTGTGTGCATAAGGACCTGCTTTTTCATCCCTTGACTTTAGAACTGGTTCGTTACAAGTGGTAA

Transcript

alvinactis_v1_g8438

Protein

Uniprot

Uniprot term	Description
Q01317	Ankyrin repeat protein nuc-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuc-2 PE=4 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01234	NNMT_PNMT_TEMT	NNMT/PNMT/TEMT family	Family	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000940	Family	Methyltransferase, NNMT/PNMT/TEMT	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24178	MOLTING PROTEIN MLT-4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030315	Cellular Component	T-tubule	Interproscan
GO:0036371	Biological Process	protein localization to T-tubule	Interproscan
GO:0055117	Biological Process	regulation of cardiac muscle contraction	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan