Gene detail

Detailed information of alvinactis_v1_g9205 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:21479614...21480624
NR annotation: KXJ23639.1, Trimethyllysine dioxygenase, mitochondrial [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VC74	Trimethyllysine dioxygenase, mitochondrial OS=Bos taurus OX=9913 GN=TMLHE PE=2 SV=1
Q91ZE0	Trimethyllysine dioxygenase, mitochondrial OS=Mus musculus OX=10090 GN=Tmlhe PE=1 SV=2
Q9NVH6	Trimethyllysine dioxygenase, mitochondrial OS=Homo sapiens OX=9606 GN=TMLHE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006898 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02668 all species →	TauD	Taurine catabolism dioxygenase TauD, TfdA family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050411 all species →	Family	Alpha-ketoglutarate-dependent hydroxylases	Interproscan
IPR003819 all species →	Domain	TauD/TfdA-like domain	Interproscan
IPR042098 all species →	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR038492 all species →	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan
IPR012776 all species →	Family	Trimethyllysine dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10696 all species →	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045329 all species →	Biological Process	carnitine biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0050353 all species →	Molecular Function	trimethyllysine dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00474	TMLHE; trimethyllysine dioxygenase	EC:1.14.11.8	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.