Gene detail

Detailed information of alvinactis_v1_g9272 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:22520510...22538118
NR annotation: XP_020901534.1, sulfide:quinone oxidoreductase, mitochondrial [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g9272

ATGTTGGGCCGCAAGCAGCTGATTTTGCTGGCATCAAGGAGCCGTGTCTTGACGACAAGCGCCATCCGACATACACAAATACCGTATAAGTTTGTCGTTGTTGGTGGTGGAGCTGGTGGCTTGTCGATTGCATCGTCGTTGAGTCGAAAGTTTGGAAAGGGATACACGGCCGTCATAGAGCCTTCTGAGCATCATTACTATCAACCTTTGTGGACACTAGTTGGTGGTGGGATCAAGCCAATAAGTGAGTCATCACAACTAACAGCTAATGTCATGCCAAAAAAGGCAACATGGTACAAGACAAAGGCCCAAGAGTTCAAACCAAATGAAAACCTTGTTGTTTGTGAAGATGGCACAGAGCTCAAATATGAGTTCTTAGTTGTTGCTGTAGGTCTCCAACTACGATTTGATAtgGTCAAAGGTCTTCCTGAAGCCCTTCATACGCCAGGAATAGGTTCCAATTATTGTGTGGATACTGTTCTTGATACATGGAAATCCATACAGGACTTTAAAGGTGGAAATGCCATCTTTACAGTGCCAAATACTCCTATCAAATGTCTTGGAGCACCACAAAAGATCATGTACATAACAGAGGAAATTATAAGAAAGAAAGGTGTGAGACACAATAGTAATGTCATGTTCAATTCAGCCCTTGGAAGGATTTTTGGTGTTGAAAAGTATGCAAAAGCCCTCCTTAAGATTGTGAAAGAACGTGATATTGAACTGAATTTTTTCCACAACCTTGTGGAAGTTAAGGCTGATACAAAAGAGGCTGTGTTTGAAATACTGTCGTCAGATGTTGGAGAGGACAAGGTTAAAGAGTACGAAACTTTCAAGTATGAATTCCTGCATGTAACCCCACCCATGAGTGCACCTGAATGTCTGATAGGAAGTCCCATATCAGACTCCAATGGATTTGTTGATGTGAATAAAGTCACCACGCAACACAAAACGTTCAGCAACATTTTTGGAATTGGAGACTGTACTAACTCACCCAATGGCAAGACTGCAGCAGCTGTTGCTGGCCAATCTGGTGTTCTGAAGACTAACTTGTTTGCACTATTAAATGGAAAGCCCATGACTGGACAGTATGACGGCTACACTTCTTGTCCTTTGGTGACTGGTCATGGCAAACTCATCTTAGCAGAATTTGACTTTGATGGCCAACCTCTTGAGACCTTCCCATTTGACCAGAGCAAGGAGCGAACATCAATGTACTACATGAAAAAAGACATATTACCAGAAGTATACTGGAATGGTATGATTAATGACCTCAAGTTTCGGTCAAGTGGAGAGGTTGTTGCTCTCAAAAAAGTTCCCTTGAGAAGACTAGAAGATGGAATCCCAAACACAGCACTAAGGGAAATTAAATCTTTACAAGAAAATGAAGAAAATCCTTATGTTGTCAAACTGATTGATGTCTTTCCCCATGGAACTGGATTTGTTCTTGTATTTGAGTACATGTGGTCAGATTTGTCAGAAGTACTTCGTAATTCTGGAAGACCTCTAACAGAGGCGCAAATCAAAAGCTATTTGTTGATGCTGTTAAAAGGAGTTGCATATTGCCACAATAGGGGTATAATGCATAGAGACCTAAAGCCTGCCAATCTCTTGATAAGCTCCACTGGTCATCTCAAAATAGCAGACTTTGGTCTTGCCCGAGTGTTTTCCAATGAAGGTGACAGACTCTATAGTCATCAGGTGGCAACAAGATGGTACAGAGCTCCAGAACTCCTCTATGGAGCAAGAAAGTATGATGAAGGAGTTGATCTCTGGGCTGTTGGCTGTATATTTGGAGAACTACTAAACAACTCACCACTTTTCCCAGGTGAGAATGACATAGAACAGCTGTGCTGTGTATTAAGGACCTTAGGGACACCCAATGAAGAAATCTGGCCAGACATGGCAGACTTACCTGATTACAATAAGATTACATTCCCTGACATGCCTGCAATACCTTTAGAGAAAATCGTCCCTGATGCTTCTGATGAGGCTATTGACTTGCTAAAGAAATTTCTAGTTTATCCTTCAAATTCAAGAATTCCTGCCAGTGAGGCTTTAATTCATCCATATTTCTTCACTGAGCCTCTCCCTGCCCATCACTCGGAATTACCAATCCCAGCACGTAACAGTAAAAAGGCTTCAGTACGTGGACACCATTGCCGAGGCTTTGACATTGATGCTAAACTGGAAAAGTCTCTTATTAGCCCAGATCGTCTTTATCATCGAAAACTGTTATCGTCTTTACAACAAGAATGA

Transcript

alvinactis_v1_g9272

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8WIP6	Cyclin-dependent kinase 20 OS=Danio rerio OX=7955 GN=cdk20 PE=2 SV=1
Q9R112	Sulfide:quinone oxidoreductase, mitochondrial OS=Mus musculus OX=10090 GN=Sqor PE=1 SV=3
Q9Y6N5	Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens OX=9606 GN=SQOR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005847 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR015904 all species →	Family	Sulphide quinone-reductase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR048002 all species →	Domain	Cyclin-dependent kinase 20-like, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10632 all species →	SULFIDE:QUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070221 all species →	Biological Process	sulfide oxidation, using sulfide:quinone oxidoreductase	Interproscan
GO:0070224 all species →	Molecular Function	sulfide:quinone oxidoreductase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g9272.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →