Gene detail

Detailed information of alvinactis_v1_g9411 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:24521482...24526770
NR annotation: XP_020898876.1, 60S ribosomal protein L4 [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D8E6	Large ribosomal subunit protein uL4 OS=Mus musculus OX=10090 GN=Rpl4 PE=1 SV=3
P36578	Large ribosomal subunit protein uL4 OS=Homo sapiens OX=9606 GN=RPL4 PE=1 SV=5
Q58DW0	Large ribosomal subunit protein uL4 OS=Bos taurus OX=9913 GN=RPL4 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006123 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14374 all species →	Ribos_L4_asso_C	60S ribosomal protein L4 C-terminal domain	Domain	Interproscan
PF00573 all species →	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013000 all species →	Conserved_site	Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site	Interproscan
IPR025755 all species →	Domain	Large ribosomal subunit protein uL4, C-terminal domain	Interproscan
IPR045240 all species →	Family	Large ribosomal subunit protein uL4, eukaryotic and archaeal type	Interproscan
IPR023574 all species →	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR002136 all species →	Family	Large ribosomal subunit protein uL4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19431 all species →	60S RIBOSOMAL PROTEIN L4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02930	RP-L4e, RPL4; large subunit ribosomal protein L4e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.